BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0012.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745...   112   3e-26
gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033...   107   1e-24

>gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 34/305 (11%)

Query: 40  NVRLYCTPMVNLFELEADPISATHLETEYRVHAMAHHGEHVEVYAVESVRGF-EVASGER 98
           N+ L CTP++NLF    DPI  TH    Y V   A      EVY+++SV+   +   GE 
Sbjct: 311 NLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRAFGYEVYSIDSVQLVRQTPQGES 370

Query: 99  F-EYAPFAAFRHRGGMLRHDMPERYFHTRARGPSGNVDAWLVLGGHLWEQQ------DRL 151
             ++ PF + RH         PE+  H  A       D  + L    +E +      D  
Sbjct: 371 VTQFRPFYSLRH------GQSPEKEGHYWAM----RRDELVALKSPGYETEISIVDIDFD 420

Query: 152 PQEI----LSLSVTGTNGMLPRK---GWREAGIRRMRGGFANVSAVRNLTAPTLPVYPPT 204
           P E+    LS+ +T TN  LP     G     ++   GG    +A+  L  PTLP     
Sbjct: 421 PAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQMEGGGLVRSAAL--LRKPTLPARFER 478

Query: 205 GDRFHWRVLSHLAPNYLSLLDA--EILRGSLALYDWTEGEMNKRRIDAIIDVRHRPLQKL 262
           G   HWR++SHL+ N+LSL+    E  +  L LYD +   +++R+I AI+ + H+     
Sbjct: 479 GRGAHWRLISHLSLNHLSLMRGGLEAFQEMLTLYDLSNSPISQRQIGAIVSIDHKASTAW 538

Query: 263 DKG----GLLRGVEIEVTLNGNQFAGEGDIELFGEMLNRFLSLYATLNLYTRLVVVAQPS 318
             G     L+RG+E+++T++   F G G +  F  +++RFL LY   N +T+L V+++ +
Sbjct: 539 LPGNPFASLVRGIEVKLTVDEEGFVGSG-LHAFAGVIDRFLGLYVHANSFTQLRVLSKRT 597

Query: 319 GRRLI 323
              L+
Sbjct: 598 AEELL 602


>gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 142/305 (46%), Gaps = 34/305 (11%)

Query: 40  NVRLYCTPMVNLFELEADPISATHLETEYRVHAMAHHGEHVEVYAVESVRGF-EVASGER 98
           N+ L CTP++NLF    DPI  TH    Y V          EVY+++SV+   E   GE 
Sbjct: 311 NLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRRAFGYEVYSIDSVQLVRETPQGES 370

Query: 99  F-EYAPFAAFRHRGGMLRHDMPERYFHTRARGPSGNVDAWLVLGGHLWEQQ--------- 148
              + PF + RH         PE   H  A       D  + L    +E +         
Sbjct: 371 ITSFRPFYSLRH------GQSPESDGHYWAM----RRDELIALKSPGYETEISIVDIDFD 420

Query: 149 -DRLPQEILSLSVTGTNGMLPR---KGWREAGIRRMRGGFANVSAVRNLTAPTLPVYPPT 204
             ++  + LS+ +T TN  LP     G     +    GG    +A+  L  PTLP     
Sbjct: 421 PSKIETDTLSIELTCTNRDLPALLAYGLPGGDLSLEGGGVIRTAAL--LRKPTLPSRFER 478

Query: 205 GDRFHWRVLSHLAPNYLSLLDA--EILRGSLALYDWTEGEMNKRRIDAIIDVRHRPLQKL 262
           G    WR++S L+ N+LSL+    E  +  L LYD +   +++R+I AI  + HRP    
Sbjct: 479 GRGAQWRLISQLSLNHLSLMRVGLEAFQEMLTLYDQSNSPISQRQISAIAAIDHRPATAW 538

Query: 263 DKG----GLLRGVEIEVTLNGNQFAGEGDIELFGEMLNRFLSLYATLNLYTRLVVVAQPS 318
             G     L+RG+E+++T++   F G G +  F  +++RF+ LY   N +++L V+++ +
Sbjct: 539 LPGNPFASLVRGIEVKLTVDEEGFVGSG-LHAFAGVIDRFMGLYVHANSFSQLTVISKRT 597

Query: 319 GRRLI 323
           G  L+
Sbjct: 598 GEELL 602


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,200,109
Number of extensions: 54600
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)