BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0007.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312717|ref|YP_003776809.1| ABC transporter permease [Herba...   152   2e-38
gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa...   129   3e-31
gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp...    70   2e-13
gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A...    65   4e-12

>gi|300312717|ref|YP_003776809.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 348

 Score =  152 bits (385), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 92/97 (94%)

Query: 103 FARLLYGFRISILFGLALTATGVVLGLLAGALQGYFAGRTDLFMQRILEIWGSMPELYLL 162
           FARLLYGFR+S+LFG+ALT  GVVLG+ AGA+QGYFAGRTDLF QR+LEIWGSMPELYLL
Sbjct: 140 FARLLYGFRVSVLFGMALTFIGVVLGVAAGAVQGYFAGRTDLFTQRLLEIWGSMPELYLL 199

Query: 163 IIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRN 199
           IIFSSIF+PS+GLLLVLLSLFGWM LSDYVRADFLRN
Sbjct: 200 IIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRN 236


>gi|300312716|ref|YP_003776808.1| ABC transporter duplicated
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 529

 Score =  129 bits (323), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 75/90 (83%)

Query: 2  SLLDIRNLSVRFGNATVVDDVSFSIQPGEKFGLVGESGSGKTVSALSVLRLNQDAHYDGQ 61
          +LL++ NL+VRFG+  VVD VSF+I PGEKF LVGESGSGKTVS+L+V++LNQDA Y+G 
Sbjct: 4  ALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGS 63

Query: 62 ILFNGEDILQKSEAAMRGVRGMDAAMIFQE 91
          IL +G+D+L KSE  M+ VRG D AMIFQE
Sbjct: 64 ILLDGQDVLAKSERQMQQVRGNDVAMIFQE 93


>gi|300311168|ref|YP_003775260.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 617

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 16/103 (15%)

Query: 3   LLDIRNLSVRFGNAT----VVDDVSFSIQPGEKFGLVGESGSGKTVSALSVLRLNQDAHY 58
           +LD+ +LSVRF  +      V D+SF +  GE   +VGESGSGK+VS+L+++RL +  H 
Sbjct: 7   VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIE--HG 64

Query: 59  DGQILF--------NGE--DILQKSEAAMRGVRGMDAAMIFQE 91
            G+I          +G+  D+ Q   A MR +RG + AMIFQE
Sbjct: 65  GGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQE 107


>gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel
          ABC transporter ATPase [Herbaspirillum seropedicae
          SmR1]
          Length = 330

 Score = 65.5 bits (158), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 8/95 (8%)

Query: 4  LDIRNLSVRF----GNATVVDDVSFSIQPGEKFGLVGESGSGKTVSALSVLRLNQDAH-- 57
          L++RNL   F    G    VDDVS S+  G   GLVGESGSGK+V+  S+L +  DA   
Sbjct: 6  LEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMV-DAPGR 64

Query: 58 -YDGQILFNGEDILQKSEAAMRGVRGMDAAMIFQE 91
             G+ILF G D+++  + ++R ++G   AMIFQ+
Sbjct: 65 IVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQD 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 508,007
Number of extensions: 15408
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 6
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)