BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0006.p
         (89 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312717|ref|YP_003776809.1| ABC transporter permease [Herba...   144   1e-36
gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel A...    55   1e-09

>gi|300312717|ref|YP_003776809.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 348

 Score =  144 bits (364), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 88/89 (98%)

Query: 1   VLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAWWIALS 60
           VLPNS+T VVTFLPFRMSA+ILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAWWIALS
Sbjct: 260 VLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAWWIALS 319

Query: 61  TFIVLTVTLLLLTNIGDALRNALDVRRKA 89
           TF+VLTVTLLLLTNIG+ALRNALDVRRKA
Sbjct: 320 TFVVLTVTLLLLTNIGNALRNALDVRRKA 348


>gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 1   VLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKNNL--DAWWIA 58
           +LPN L P++     +++ +I    +L FLGLGVP + PSLG L++ G   +    +WI+
Sbjct: 230 ILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWIS 289

Query: 59  LSTFIVLTVTLLLLTNIGDALRNALDVR 86
               I L V ++ +  +GD LR+ L+ R
Sbjct: 290 FYPGITLLVVIVAINLVGDRLRDILNPR 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 248,877
Number of extensions: 7984
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 1,619,870
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,340,505
Effective search space: 40215150
Effective search space used: 40215150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)