BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0001.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312719|ref|YP_003776811.1| oligopeptide ABC transporter pe...   541   e-155
gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip...    70   2e-13

>gi|300312719|ref|YP_003776811.1| oligopeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 609

 Score =  541 bits (1395), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 250/318 (78%), Positives = 281/318 (88%)

Query: 7   PVFADHAFSLYDTPKYPAGFTHFDYVNPDAPKRGTLYLANPDRRTSFDKFNPFSLKGVAA 66
           P  A+HAFSLYDTP+Y  GF+HFDYVNPDAP+RGTLYLANPDRRTSFDKFNP S+KGVAA
Sbjct: 26  PARAEHAFSLYDTPRYGPGFSHFDYVNPDAPRRGTLYLANPDRRTSFDKFNPMSMKGVAA 85

Query: 67  AGVSTLMFETLAIGSSDEVATMYGLLADDMTLAPDRMAMTFHLNPKARFNNGDPVTAADV 126
           AG+  LMFETLA+ S DEVAT+YGLLADDM LAPDRM+MTFHLNPKARFNNGD V+AADV
Sbjct: 86  AGLDQLMFETLAVSSGDEVATVYGLLADDMQLAPDRMSMTFHLNPKARFNNGDKVSAADV 145

Query: 127 KYSYDTLLAKGAPQFKSMFADVRQCVVVDAQTVRFEFKTRNHELPLIVGGVPVFSRKWAA 186
           KYS+DTL+AKGAPQ+KS+FADV+ CVVVDA TVRF+F + NHELPLIV  VPVFSRKWA 
Sbjct: 146 KYSFDTLMAKGAPQYKSVFADVKACVVVDASTVRFDFASSNHELPLIVASVPVFSRKWAQ 205

Query: 187 GTAFDNIQLTPPITSGPYLIDAYDVGRNITYKRNPAYWGTDIPVRKGSFNFERIAYRFYK 246
           GT FD IQLTPPI++GPYLI+ YD GR+ITYKRNP YWG D+P R+G FNFERI YRFYK
Sbjct: 206 GTPFDQIQLTPPISTGPYLIERYDTGRSITYKRNPDYWGKDVPARRGMFNFERIVYRFYK 265

Query: 247 DDVARLEAFKAGEFDVVVEYSAKNWVRNYNGPKFASGEIVKRELKHSNGAGMQGFVMNLR 306
           DD+ARLEAFKAGEFDVVVEYSAKNW R+Y GP+F  G I+K+E KHSNGAGMQGFVMNLR
Sbjct: 266 DDLARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRIIKKEFKHSNGAGMQGFVMNLR 325

Query: 307 RNQFKDARVRQALXAGID 324
           R+QFKD RVRQA+   +D
Sbjct: 326 RDQFKDVRVRQAIGLALD 343


>gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 26/259 (10%)

Query: 101 DRMAMTFHLNPKARFNNGDPVTAADVKYSYDTLLAKGAPQFKSMFA----DVRQCVVVDA 156
           D     F L P  ++ +G P TA DV +SY    A+  P   + FA     V      D 
Sbjct: 83  DPKTWEFKLRPNVKWQDGKPFTADDVIFSYQR--ARAVPGSVATFAGYLRTVESVTAKDP 140

Query: 157 QTVRFEFKTRNHELPLIVGGVPVFSRKWAAGTAFDNIQL-TPPITSGPYLIDAYDVGRNI 215
            T+  +    N +LPL +  V + S+     +  +N       I +GPY   +Y  G  +
Sbjct: 141 LTLVIKTNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRV 200

Query: 216 TYKRNPAYWGTDIPVRKGSFNFERIAYRFYKDDVARLEAFKAGEFDVVVEYSAKNWVRNY 275
             +RN  YW        G   +E++ YR+  +  AR  A  +G+ DV+ + S  +  +  
Sbjct: 201 VMQRNDDYWN-------GKPLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLK 253

Query: 276 NGPK---FASGEIVKRELKHSNGAGMQGFVMN-----LRRNQFKDARVRQALXAGIDPGF 327
             P    +    +    ++ S   G   F+ +     L +N   D RVR+A+   I+   
Sbjct: 254 QSPNVKVYPYNGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAIN--- 310

Query: 328 RHKDRSDRVRSGAHTTQHQ 346
             K   DR+  GA T  +Q
Sbjct: 311 -RKALIDRILQGAATEANQ 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,398,014
Number of extensions: 58192
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)