BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0015.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312467|ref|YP_003776559.1| antimicrobial peptide ABC trans...   182   9e-48

>gi|300312467|ref|YP_003776559.1| antimicrobial peptide ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  182 bits (463), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/153 (79%), Positives = 135/153 (88%)

Query: 1   LMAVLPGVALDELWQVVGIGENALLVVSGMVVIVGLAGLVSAILASLGERRRELAVLRSV 60
           LMAVLPGVALD+LW VVGIGENALLVVSGMVV+VGLAGLV+AILASLGERRRELA+LRSV
Sbjct: 270 LMAVLPGVALDQLWDVVGIGENALLVVSGMVVVVGLAGLVAAILASLGERRRELAILRSV 329

Query: 61  GARPGDVFLLLALEGLAVMLAGVVLGVVLLTLALFALGPFLSAQFGVTLHPALPAAGELQ 120
           GARP DV LLL +EGL VMLAGV  G++LL+L ++ LGP L+ QFG+ L PA PAAGELQ
Sbjct: 330 GARPLDVLLLLCIEGLGVMLAGVASGLLLLSLLVWTLGPLLAEQFGIALQPAWPAAGELQ 389

Query: 121 LLGWTVLAGFAASLLPGLRAYRLSLADGLTPRL 153
           LL WTVLAG  ASLLP LRAYRLSL+DGLTPR+
Sbjct: 390 LLLWTVLAGLVASLLPALRAYRLSLSDGLTPRI 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.144    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 401,968
Number of extensions: 12992
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)