BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0006.p
         (51 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehy...    93   3e-21

>gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate
          dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 93.2 bits (230), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/45 (91%), Positives = 43/45 (95%)

Query: 2  YTPQDLKQILSAGLLSFPLTDFDEQGDFRPKSYIERLEWLAPXSA 46
          YTPQDLKQILS+GLLSFPLTDFDEQGDFRPK+YIERLEWLAP  A
Sbjct: 4  YTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGA 48


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 162,165
Number of extensions: 4201
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 51
Length of database: 1,619,870
Length adjustment: 24
Effective length of query: 27
Effective length of database: 1,506,230
Effective search space: 40668210
Effective search space used: 40668210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)