BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0005.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehy...   353   6e-99

>gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  353 bits (905), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 168/193 (87%), Positives = 180/193 (93%)

Query: 1   MPHYLTEASQEGIAEHVEAVCKSVKFGVIIYNRGVCKLNADMLERLADRCPNLIGFKDGV 60
           MPHYLTEASQ+GIA HVEAVCKSVKFGVIIYNR VCKLNAD L++LADRCPNLIGFKDG+
Sbjct: 114 MPHYLTEASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGI 173

Query: 61  GEIESMVTIHRRLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAI 120
           GEIE MV I R+LGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTA++FY AI
Sbjct: 174 GEIEPMVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAI 233

Query: 121 AREDHATVGKLIDDFFLPYLAIRNRKAGYAVSIVKAGARVVGHDAGPVRTPLTACTEAEH 180
           A+EDH TVGKLID+FFLPYLAIRNRKAGYAVSIVKAGAR+ GHDAGPVRTPLT CT  EH
Sbjct: 234 AKEDHDTVGKLIDEFFLPYLAIRNRKAGYAVSIVKAGARIAGHDAGPVRTPLTDCTPEEH 293

Query: 181 EELAALIKRLGPQ 193
           EELAAL+ +LGPQ
Sbjct: 294 EELAALMNKLGPQ 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 610,775
Number of extensions: 25363
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)