BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0001.p
         (935 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...   509   e-145

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score =  509 bits (1311), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/601 (44%), Positives = 370/601 (61%), Gaps = 18/601 (2%)

Query: 198 LLIENAARXGKARAWQD---DNPDLGCVPVMVHGDAAFAGQGIVMETLNLTRTPGYTLGG 254
           L I N    G  +A  D   D      +P++VHGDAAFAGQG+VMETLNL +T GY  GG
Sbjct: 330 LEIVNPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQTRGYGTGG 389

Query: 255 TVHIIVNNQIAFTTSNAMDVAGNLYCTDIGRLVDAPVIRVNADHPDELVRAAAIALDYRM 314
           TVHI++NNQI FTTS+  D    LYC+D+ ++++APV+ VN D P+ +V A  IA+DYRM
Sbjct: 390 TVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFATQIAVDYRM 449

Query: 315 KYGADVIIDLIGYRRLGHSEHDIPALTHPRLQAAITRHPPVTELYHARIAGETAHAATAD 374
           K+  D+++D+I +R+LGH+E D PALT P +   I +HP   +LY  ++   T     AD
Sbjct: 450 KFKKDIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYADKLV--TQQTIPAD 507

Query: 375 SLDRL------RIDMLRMVLTGVLAG---KPAMQMLPAIDDDASGMFSRPPSIERLQALA 425
             + L       +D  +  +  VL     K A+  LP ++   +        +  L+ LA
Sbjct: 508 GGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDWLPFLNRKWTDAAETAVPMAELKRLA 567

Query: 426 ASITTPPDNFQVHEVIGKLIRKWQTGAADAQNPIDWCFAENLACASLLGDGVDIRLSGLD 485
           A ITT P+ F+VH ++ K++   +      +  +DW   E+LA ASL+  G  +RL+G D
Sbjct: 568 AKITTVPEGFKVHSLVEKVLND-RAAMGRGEMNLDWGMGEHLAYASLVSSGYAVRLTGQD 626

Query: 486 VGHGTFMHRHARWFDQNDVDGQAGEVFVPLDHIGPGQGRIDIVNSPLTEEAVLGFEYGYS 545
            G GTF HRHA   DQN     AG  F+PL ++   Q    +++S L+EEAVL FEYGYS
Sbjct: 627 AGRGTFTHRHAVLHDQNRERWDAG-TFIPLQNVAENQSTFTVIDSVLSEEAVLAFEYGYS 685

Query: 546 VQAQRRLAIWEAQFGDFVNGAQVIVDQYIASGEHKWGYRSGLTMLLPHGQEGAGPEHSTA 605
                 L IWEAQFGDF NGAQV++DQ+I+SGE KWG  SGL  +LPHG EG GPEHS+A
Sbjct: 686 TAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLPHGYEGQGPEHSSA 745

Query: 606 YLGRFLQLCADRNIRVAFPSTSAQWFHLLRQQAVTADPKPLVVMSPKSQLYGNPRSHSSL 665
            + R+LQLCAD N++V  P+T+AQ FHLLR+Q +    KPL++M+PKS L  N  + S L
Sbjct: 746 RIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIIMTPKS-LLRNKDAGSPL 804

Query: 666 QELSEGGFLPLLADKNAA-DPAAVNRVILCSGKFFYDIEAARNDTHDASTAVIRVEQLYP 724
            +L++G F  ++ + +   D   V R++ CSGK +YD+  AR +     TA+IRVEQLYP
Sbjct: 805 SDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDLVNARKERGQTDTAIIRVEQLYP 864

Query: 725 FPQEALADALAAFPNLCEVVWTQEEDKNQGAWRFVRDTLEHCLPAGVSLRNVCRIATAAG 784
           FP +A A AL  FPN  E+VW Q+E +NQGAW  ++  +   L  G  L    R A+A+ 
Sbjct: 865 FPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHNIFENLSEGQKLAYAGRPASASP 924

Query: 785 A 785
           A
Sbjct: 925 A 925



 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 9/164 (5%)

Query: 50  IAQFIQAHRNAGHRMARLDPLTATALQSAPALPELTPEFHGL---DPAMPRPPGSTIF-P 105
           + Q I  +R+ G R A LDPL     Q  P +PEL P F+G    D  +     +T F P
Sbjct: 97  VTQLIAGYRDLGSRFANLDPLQR---QERPNIPELDPSFYGFTDADMDIVFNINNTYFGP 153

Query: 106 AAVTVQQLDRQLKAIYCGAIALDCSGVRDEARRDWLFARME--NASPAVPAAQRQSILHR 163
              +++ L + L+  Y  +I  + + + D A   WL  R+E   A P+  + +++ IL R
Sbjct: 154 ETASLRDLLQMLRDTYTRSIGAEFTYISDMAEVRWLEERLEPTRAVPSFSSEKKKHILER 213

Query: 164 LITAEVWERHLAVTAPHAKRFSMEGCESLLPLMDLLIENAARXG 207
           L  AE  ER+L       KRFS+EG ES +  +D  I+ A   G
Sbjct: 214 LTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKG 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,106,393
Number of extensions: 137942
Number of successful extensions: 323
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 2
Length of query: 935
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 841
Effective length of database: 1,174,780
Effective search space: 987989980
Effective search space used: 987989980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)