BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0031.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspiril...   359   e-100
gi|300313212|ref|YP_003777304.1| glutamate synthase large subuni...    76   3e-15

>gi|300312905|ref|YP_003776997.1| glutamate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 531

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/188 (89%), Positives = 179/188 (95%)

Query: 3   GAAPLEFTDHVGMPLQEGLLMVHNTLVGIGMRDRVKIGASGKIITAFDVARTLALGADWC 62
           GAAPLEF DHVGMPLQEGL+MVHNTLVGIG+RD+VKIGASGKIITAFDVARTLALGADWC
Sbjct: 344 GAAPLEFVDHVGMPLQEGLVMVHNTLVGIGLRDKVKIGASGKIITAFDVARTLALGADWC 403

Query: 63  NSARGFMFALGCIQSQSCHTDRCPTGVATQNPTRARALVVPDKAQRVYRFHQSTLHALQE 122
           NSARGFMFALGCIQSQSCHTDRCPTGVATQN  RARALVVPDKA+RV+RFHQSTLHALQE
Sbjct: 404 NSARGFMFALGCIQSQSCHTDRCPTGVATQNADRARALVVPDKAERVFRFHQSTLHALQE 463

Query: 123 LVQAAGLPHTSALRPFHIVHRINDHEIQLLSEMLKYLEPGDLITGNYRYQVYEKYWPIAR 182
           LVQAAGLPHTSALRP HIV RINDHEIQL+S +LKYL+P DL+ GNYRY+VYEK+WPIAR
Sbjct: 464 LVQAAGLPHTSALRPHHIVRRINDHEIQLMSNVLKYLQPNDLLDGNYRYRVYEKFWPIAR 523

Query: 183 AESFHPEI 190
           AESFHPE 
Sbjct: 524 AESFHPEF 531


>gi|300313212|ref|YP_003777304.1| glutamate synthase large subunit
            oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 1558

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 3    GAAPLEFTDHVGMPLQEGLLMVHNTLVGIGMRDRVKIGASGKIITAFDVARTLALGADWC 62
            GA+PL    H G P + GL     TLV  G+R+R+++ A G++ T  DV     LGAD  
Sbjct: 1085 GASPLSSIKHAGSPWELGLAETQQTLVLNGLRNRIRVQADGQMKTGRDVVIGAMLGADEF 1144

Query: 63   NSARGFMFALGCIQSQSCHTDRCPTGVATQNPT-RARALVVPDKAQRVYRF 112
              A   +   GCI  + CH + CP GVATQ+P  RA+    P+     + F
Sbjct: 1145 GFATAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNFFFF 1195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 715,170
Number of extensions: 28458
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)