BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0030.p
         (141 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies...   129   1e-31

>gi|300312904|ref|YP_003776996.1| diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  129 bits (324), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 68/75 (90%)

Query: 9   RIVRADGDVRWVWERGVGIYNAAGTLDALEGYVQDVTARKEADQALLEAERRYRSIFENA 68
           RIVRADG VRWVWERGVGIYNA G ++A+EG++QDVT RKEA QAL EAERRYRSIFENA
Sbjct: 89  RIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERKEAAQALQEAERRYRSIFENA 148

Query: 69  IEGVFQSTPDGGYIA 83
           IEGVFQ+TPDG YIA
Sbjct: 149 IEGVFQTTPDGTYIA 163



 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 86  VFQSTPDGGY-IAEVLQRILSAVARPWVVGDREFHVTCSIGV 126
           V Q+  +G   IAEV+QRIL+AVARPW  GDREF VT SIGV
Sbjct: 352 VLQNQTEGEAGIAEVMQRILAAVARPWQAGDREFQVTASIGV 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 482,499
Number of extensions: 19023
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 65
Effective length of database: 1,260,010
Effective search space: 81900650
Effective search space used: 81900650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)