BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0015.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587...   291   5e-80

>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  291 bits (744), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 135/171 (78%), Positives = 150/171 (87%)

Query: 1   MAEPKLVADCVKAMRDAVDIDVTVKHRIGIDDVESYDFVRDFVGTIADAGCKTFVVHARN 60
           M EP LVADCVKAMRDAV IDVTVKHRIGID+VESYDFVRDFVG IA+AGC+TF+VHARN
Sbjct: 129 MGEPTLVADCVKAMRDAVSIDVTVKHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARN 188

Query: 61  AVLKGLSPKENREIPPLKYDYAYRLKKDFPALEILINGGIKTVAEIDLHLQHVDGVMLGR 120
           A+LKGLSPKENREIPPLKYDYAY+LKKDFP+LEILINGGIKT+ EID HL+HVDGVMLGR
Sbjct: 189 AILKGLSPKENREIPPLKYDYAYQLKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGR 248

Query: 121 EAYHNPFLMAGFDARYYSQLDGGLQPTRNAVIAVMVEYARAQLTAXKKNAR 171
           EAYHNP+LMAGFDARYY+ L+GGLQ +R  VI  M+ Y + QL     N R
Sbjct: 249 EAYHNPYLMAGFDARYYAALEGGLQRSRAEVIEAMLPYIKRQLELHGDNGR 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 685,436
Number of extensions: 24800
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)