BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0011.p (458 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312879|ref|YP_003776971.1| transcription antiterminator (L... 261 9e-71 gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami... 200 3e-52 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 82 8e-17 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 69 6e-13 >gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 261 bits (667), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 123/144 (85%), Positives = 134/144 (93%) Query: 18 MTNKIQHANPSKNRTPRHRAREFALQGLYQWLLNNEDAGAIEAHIREAHGFDKADAEHFD 77 M+NK QHAN +KNRTPRHRAREFALQGLYQWLLN+EDAGAIEAHIREAHGFDKADAEHFD Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 Query: 78 VLLYGAIKQAPQLRTDLAPLIDRAITELSPVEHAALLIGAFELKNNLEIPYRVVINEAVE 137 LL GAI+ A +LR LAPLIDR I ELSPVEHAALLIGA+EL+N++EIPY+VVINEAVE Sbjct: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 Query: 138 LTKSFGGIDGHKYVNGVLDRFAAK 161 LTKSFGGIDGHKYVNGVLDRFAA+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQ 144 >gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 393 Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 93/116 (80%), Positives = 103/116 (88%) Query: 343 VACFAPESIALYEERKAEFKRRRDYIVPQLERLGFKVPVMPDGAFYVYADCSALSDDADA 402 VACF P+++ALYEERKAEFKRRRDYIVP LE LGF VPVMPDGAFYVYADCSAL+DDAD Sbjct: 277 VACFTPQTLALYEERKAEFKRRRDYIVPALESLGFTVPVMPDGAFYVYADCSALADDADQ 336 Query: 403 FTIDMLNKAGVVLVPGLDFGPATARRYIRLSYATSMENLQEAVQRLEKYLAQRKAA 458 ++DMLN+AGVVLVPGLDFGP TARRYIRLSYATSMENLQEAV RL + +R+ A Sbjct: 337 LSLDMLNEAGVVLVPGLDFGPFTARRYIRLSYATSMENLQEAVARLRVFFEKRRKA 392 Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/137 (80%), Positives = 121/137 (88%) Query: 198 MSFHDLASRLQNIAPFHVMELGKMAAALEQQGNHIIHMGIGEPDFTAAPAVVAAATQAMA 257 M+ + LA+RLQ+IAPFHVMEL K AA LEQQG H+IHMGIGEPDFTA PAVV AAT+AM Sbjct: 1 MNLNQLAARLQHIAPFHVMELSKKAAVLEQQGRHLIHMGIGEPDFTAPPAVVEAATRAMT 60 Query: 258 DGKMQYTSATGLPALREAISAHYQRVYGFDIAPSRIIVTAGASAALLLACAALVEKGSEV 317 +GKMQYTSATGLP LR AIS HY+ VYG +IAP RI+VTAGASAALLLACAALVE+ SEV Sbjct: 61 EGKMQYTSATGLPQLRAAISDHYRSVYGLEIAPERIVVTAGASAALLLACAALVERDSEV 120 Query: 318 LMPDPSYPCNRHFVAAF 334 LMPDPSYPCNRHFVAAF Sbjct: 121 LMPDPSYPCNRHFVAAF 137 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 10/190 (5%) Query: 221 MAAALEQQGNHIIHMGIGEPDFTAAPAVVAAATQAMADGKMQYTSATGLPALREAISAHY 280 M+A ++G +++G G PDF PA+VAA TQAM +G QY G+P LREAI+ Sbjct: 21 MSALASEKGA--VNLGQGFPDFHCDPALVAAVTQAMQEGLNQYPPMAGVPVLREAIAEKV 78 Query: 281 QRVYGFDIAP-SRIIVTAGASAALLLACAALVEKGSEVLMPDPSYPCNRHFVAAFXPPPP 339 +++YG P S I VTAGA+ +L + V G EV++ +P Y C +V A Sbjct: 79 EKLYGHRYDPVSEITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDC---YVPAIE---L 132 Query: 340 PPGVACFAPESIALYEERKAEFKRRRDYIVPQLERLGFKVPVMPDGAFYVYADCSALSDD 399 GV F + + + + + + P+ + P P G+ AD +AL+D Sbjct: 133 AGGVPVFVQMEVGA-QGYSIPWDKVKAAVTPKTRMIMVNTPHNPTGSVMRAADVAALADI 191 Query: 400 ADAFTIDMLN 409 I +L+ Sbjct: 192 VRGTDILILS 201 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 206 RLQNIAPFHVMELGKMAAALEQQGNHIIHMGIGEPDFTAAPAVVAAATQ-AMADGKMQYT 264 R++ + P+ ++ A ++G II M +G PD P +V + A Y+ Sbjct: 43 RIERLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPDTHGYS 102 Query: 265 SATGLPALREAISAHYQRVYGFDIAP-SRIIVTAGASAALLLACAALVEKGSEVLMPDPS 323 S+ G+P LR AI+ Y+ Y D P S IVT G+ L A ++KG VL+P+PS Sbjct: 103 SSKGIPRLRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKGDTVLVPNPS 162 Query: 324 YPCN 327 YP + Sbjct: 163 YPIH 166 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,232,783 Number of extensions: 44835 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 5 Length of query: 458 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,203,190 Effective search space: 445180300 Effective search space used: 445180300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)