BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0008.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate ...   838   0.0  

>gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/439 (90%), Positives = 422/439 (96%)

Query: 2   DIPVLANLFGTPRRVALGMGAEDVSELRRIGHLLAKLKEPEPPKGFKDVMGLGTLVKSLW 61
           +IPVLANLFGTP RVALGMGA+++ ELRRIGHLLA+LKEPEPPKG KDV+ LG+LVKSLW
Sbjct: 56  NIPVLANLFGTPHRVALGMGADNIGELRRIGHLLARLKEPEPPKGIKDVLDLGSLVKSLW 115

Query: 62  DMAPKEQRSAPCQDIVWEGNDVDLDRLPIQHCWPGDVAPLITWGLVITKGPNKKRQNLGI 121
           DMAPKE+ SAPCQD+VWEG DVDL RLPIQHCWPGD+APLITWGLV+TKGP+KKRQNLGI
Sbjct: 116 DMAPKERGSAPCQDVVWEGKDVDLSRLPIQHCWPGDIAPLITWGLVVTKGPHKKRQNLGI 175

Query: 122 YRQQVLGRNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDS 181
           YRQQVLG NKVIMRWLAHRGGALDFREHCIANPGKPYP+ VALGADPATILGAVTPVPD+
Sbjct: 176 YRQQVLGPNKVIMRWLAHRGGALDFREHCIANPGKPYPVVVALGADPATILGAVTPVPDN 235

Query: 182 LSEYQFAGLLRGSRTELVKAIGSELRVPASAEIVLEGHIYPDESHPSGYEHALEGPYGDH 241
           LSEYQFAGLLRGSRTELVKA+GSELRVPASAEIVLEGHIYPDE H SG+EHALEGPYGDH
Sbjct: 236 LSEYQFAGLLRGSRTELVKAMGSELRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDH 295

Query: 242 TGYYNEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFIPLLQKQFSEI 301
           TGYYNEQDWFPVFTIDRITMRRD IYHSTYTGKPPDEPAVLGVALNEVF+PLLQKQF+EI
Sbjct: 296 TGYYNEQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEI 355

Query: 302 TDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWK 361
           TDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWK
Sbjct: 356 TDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWK 415

Query: 362 EVIWAITTRVDPVRDTVMVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETNREWGTTI 421
           EVIWAITTRVDPVRDTVMVDNTPIDYLDFASP+SGLGSKMGIDATNKWPGET+REWGT I
Sbjct: 416 EVIWAITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPI 475

Query: 422 AMTDAVKKRVDSIWSELGI 440
            M + VKKRVD+IW +LGI
Sbjct: 476 VMDEDVKKRVDAIWQDLGI 494


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,515,762
Number of extensions: 68115
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)