BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0006.p (153 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311799|ref|YP_003775891.1| two component heavy metal respo... 229 8e-62 gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ... 151 2e-38 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 144 2e-36 gi|300312680|ref|YP_003776772.1| two component response regulato... 108 3e-25 gi|300313818|ref|YP_003777910.1| two component transcription reg... 106 8e-25 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 229 bits (584), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 110/121 (90%), Positives = 116/121 (95%) Query: 1 MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60 MKILIVEDE KM+EYLCKGLTEQGC VDLAANG+DGQHLAI+HDYDVIVLDVMLPGLDGF Sbjct: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60 Query: 61 SVLRSLRTVKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRG 120 SVLR+LR VK+TPVIMLTARD VEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR Sbjct: 61 SVLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120 Query: 121 R 121 + Sbjct: 121 Q 121 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 151 bits (382), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 72/121 (59%), Positives = 93/121 (76%) Query: 1 MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60 M IL++ED+ K +YL KGL E G VDLA NG DG H+A++ DYD++VLDVMLPGLDG+ Sbjct: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60 Query: 61 SVLRSLRTVKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRG 120 V+ +LR+ + PV+ LTARD V+DRI+GL GADDYL+KPFSF EL+ R++ L RRG Sbjct: 61 QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120 Query: 121 R 121 R Sbjct: 121 R 121 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 144 bits (364), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/121 (58%), Positives = 88/121 (72%) Query: 1 MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60 M IL+VEDE K +YL +GLTE G VD G+DG H A DY +I+LDVMLPG++G+ Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 SVLRSLRTVKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRG 120 +LR LR TPV+ LTARD VEDR+KGL GADDYL+KPF++ ELLAR++ L RRG Sbjct: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 Query: 121 R 121 R Sbjct: 121 R 121 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 108 bits (269), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 3/132 (2%) Query: 1 MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60 M +L+VED+ + + L + L G TV NG D L+ + + V+VLD+ LPG+DGF Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 Query: 61 SVLRSLRTV-KQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 VLR +R TPV++LTARD + DR+ GL GADDYL+KPF+ EL+AR++AL RR Sbjct: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 Query: 120 GRXLLHTIRGMG 131 + T+ G+ Sbjct: 119 PQPAQLTVGGLS 130 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 106 bits (265), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Query: 1 MKILIVEDEHKMAEYLCKGLTEQGCTVDLAANGIDGQHLAIQHDYDVIVLDVMLPGLDGF 60 M+IL+VED +++ +L K + + TV+ A NG D L + DY +++LD+ LP +DG Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 SVLRSLRTV-KQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 VL+ +R +TPV++LTAR + DR+ GL+ GADDYL KPF EL AR++AL RR + Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 120 G 120 Sbjct: 121 N 121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.142 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 424,257 Number of extensions: 14410 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 36 Length of query: 153 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 76 Effective length of database: 1,255,275 Effective search space: 95400900 Effective search space used: 95400900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)