BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0002.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprot...   102   8e-24
gi|300310854|ref|YP_003774946.1| NodT family protein [Herbaspiri...    61   2e-11

>gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  102 bits (253), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 68/76 (89%)

Query: 2   ENGDAASQASAASLGAARLSIQATLAQNYLQLRVTDLQKDLYARTVAAYTRSFQLTQHQY 61
           E G+A +QASAASL AARLSIQATLAQ+YLQLRVTDLQKDLY RTVAAYTRS QL+ HQY
Sbjct: 176 EAGEANAQASAASLAAARLSIQATLAQDYLQLRVTDLQKDLYRRTVAAYTRSLQLSTHQY 235

Query: 62  DAGVALRSDVAQAEKK 77
           +AG ALRSDVAQAE +
Sbjct: 236 EAGTALRSDVAQAETQ 251


>gi|300310854|ref|YP_003774946.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score = 60.8 bits (146), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 23  QATLAQNYLQLRVTDLQKDLYARTVAAYTRSFQLTQHQYDAGVALRSDVAQAEKK 77
           QA +AQNYLQLRV D Q+ L   TV AY RS Q+ Q+QY AG+  +SDV QA+ +
Sbjct: 187 QAQVAQNYLQLRVLDAQQQLLEETVQAYERSLQVAQNQYAAGMVAKSDVIQAQTQ 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.122    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 217,103
Number of extensions: 6045
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)