BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0092.0057.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 416 e-118 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 174 4e-45 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 171 6e-44 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 157 9e-40 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 150 1e-37 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 416 bits (1070), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/248 (83%), Positives = 225/248 (90%) Query: 6 SQNLQNQIALVTGASRGIGRAIALELVRQGAKVVGTATSAAGAAAISEYLEQAQPGCGKG 65 +QNLQ Q+ALVTGASRGIGRAIA EL RQGAKV+GTATS +GAAAI+EYL P G+G Sbjct: 3 AQNLQGQVALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGPEAGRG 62 Query: 66 VVLNVNDAAACSALIDDMQKEFGGLSILVNNAGITQDQLAMRMKDEEWDNVIATNLTAVG 125 VLNVNDA A AL++ +QK+FG LSILVNNAGITQDQLAMRMKDEEWD+VIATNLTAVG Sbjct: 63 AVLNVNDAEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVG 122 Query: 126 RLSRAVLRGMMKARNGRIINITSVVGSAGNSGQMNYAAAKAGVAGMSRALAREIGSRNIT 185 RLSRAVLRGMMKAR GRIINITSVVG AGN GQMNYAAAKAGVAGMSRALAREIGSRNIT Sbjct: 123 RLSRAVLRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNIT 182 Query: 186 VNCIAPGFIDTDMTKVLGEQQTAALLQQIPLGRLGAPEDIAAAVAFLASPQAAYITGTTL 245 VNC+APGFIDTDMT+ L EQQ+AA+LQQIPLGRLGA E+IA AVAFLASPQAAYITGTTL Sbjct: 183 VNCVAPGFIDTDMTRALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTL 242 Query: 246 HVNGGMYM 253 +VNGGMYM Sbjct: 243 NVNGGMYM 250 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 174 bits (442), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 149/250 (59%), Gaps = 10/250 (4%) Query: 9 LQNQIALVTGASRGIGRAIALELVRQGAKVVGTATSAAGAAAISEYLEQAQPGCGKGVVL 68 + +IA VTG GIG AI L + G VV A + ++L + +G + Sbjct: 1 MSKRIAYVTGGMGGIGTAICTRLCKDGYTVV--AGCGPNSTRKDKWLATMRE---QGFDI 55 Query: 69 -----NVNDAAACSALIDDMQKEFGGLSILVNNAGITQDQLAMRMKDEEWDNVIATNLTA 123 NV++ + A + ++ E G + +LVNNAGIT+D +M ++WD VI TNL + Sbjct: 56 HASEGNVSNWESTKAAFEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNS 115 Query: 124 VGRLSRAVLRGMMKARNGRIINITSVVGSAGNSGQMNYAAAKAGVAGMSRALAREIGSRN 183 + +++ V+ GM + GRIINI+SV G G GQ NY+ AKAG+ G + ALA+E+ ++ Sbjct: 116 LFNVTKQVIEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKG 175 Query: 184 ITVNCIAPGFIDTDMTKVLGEQQTAALLQQIPLGRLGAPEDIAAAVAFLASPQAAYITGT 243 +TVN ++PG+I TDM + + + ++ IP+ RLG PE+IA+ VA++AS + Y TG+ Sbjct: 176 VTVNTVSPGYIGTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGS 235 Query: 244 TLHVNGGMYM 253 +NGG+YM Sbjct: 236 DFSLNGGLYM 245 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 107/242 (44%), Positives = 146/242 (60%), Gaps = 12/242 (4%) Query: 15 LVTGASRGIGRAIALELVRQGAKVVGTATSAAGAAAISEYLEQAQPGCGKGVVLNVNDAA 74 VTG+SRGIGRAIAL L R+G +V + AA + + G+ V + D A Sbjct: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHARRDAA---DQVAAEIAALGRQVRVLQFDVA 66 Query: 75 ----ACSALIDDMQKEFGGLSILVNNAGITQDQLAMRMKDEEWDNVIATNLTAVGRLSRA 130 A L+ D+++ G +V NAGIT+D M E+WD+V+ TNL + Sbjct: 67 NREQAAQVLLADVEQH-GCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNP 125 Query: 131 VLRGMMKARN-GRIINITSVVGSAGNSGQMNYAAAKAGVAGMSRALAREIGSRNITVNCI 189 ++ M++ R GRI+ + SV G GN GQ+NY+AAKAGV G ++ALA E+ R+ITVNC+ Sbjct: 126 LVMPMVRRRAAGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCV 185 Query: 190 APGFIDTDMTKVLGEQQTAALLQQIPLGRLGAPEDIAAAVAFLASPQAAYITGTTLHVNG 249 APG IDTDMT+ + +L+ IP R G PE++AAAVAFL SP AAYIT + VNG Sbjct: 186 APGLIDTDMTE---DAPIDEILKLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISVNG 242 Query: 250 GM 251 G+ Sbjct: 243 GL 244 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 157 bits (397), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 148/251 (58%), Gaps = 9/251 (3%) Query: 9 LQNQIALVTGAS--RGIGRAIALELVRQGAKVVGTATSAAGAAAISEYLEQAQPGCGKGV 66 L++++A++TG + G+G + A + QGA++V A A + L G+ Sbjct: 3 LKDKVAIITGGAGQNGLGFSTARLMAAQGARIVILDLERAEPAGAAARLGAQH----LGL 58 Query: 67 VLNVNDAAACSALIDDMQKEFGGLSILVNNAGITQDQLAMRMKDEEWDNVIATNLTAVGR 126 V +V D AAC A + K+FG + ILVNNAG+TQ + + +++D ++ +L Sbjct: 59 VADVTDKAACEAAAAAVLKQFGRIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLY 118 Query: 127 LSRAVLRGMMKARNGRIINITSVVGSAGNS--GQMNYAAAKAGVAGMSRALAREIGSRNI 184 +S+AVL M ++G I+ I+SV G G +Y+AAKAGV G++RA+ARE G + I Sbjct: 119 MSQAVLPAMQAQQSGSIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGI 178 Query: 185 TVNCIAPGFIDTDMTK-VLGEQQTAALLQQIPLGRLGAPEDIAAAVAFLASPQAAYITGT 243 VNCI PG I TD+ K +L ++ A + Q IPLGRLG P+D+ FLAS + Y TG Sbjct: 179 RVNCITPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGV 238 Query: 244 TLHVNGGMYMN 254 TL VNGGM ++ Sbjct: 239 TLDVNGGMLIH 249 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 144/251 (57%), Gaps = 9/251 (3%) Query: 9 LQNQIALVTGAS--RGIGRAIALELVRQGAKVVGTATSAAGAAAISEYLEQAQPGCGKGV 66 L++++A++TG + G+G A A + QGA+VV + A AA + + G+ Sbjct: 3 LKDKVAVITGGAGINGLGYATARLMAEQGARVVVLDLAQADPAAAAARIGSQH----LGL 58 Query: 67 VLNVNDAAACSALIDDMQKEFGGLSILVNNAGITQDQLAMRMKDEEWDNVIATNLTAVGR 126 V +V D A+C + ++FG + ILVNNAGITQ + + ++D ++ +L Sbjct: 59 VADVTDKASCETAAAAILQQFGRIDILVNNAGITQPVKTLEITGADYDRILDVSLRGTLY 118 Query: 127 LSRAVLRGMMKARNGRIINITSVVGSAGNS--GQMNYAAAKAGVAGMSRALAREIGSRNI 184 +S+AVL M +NG II I+SV G G +Y+AAKAGV G++RA+ARE G I Sbjct: 119 MSQAVLPAMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGI 178 Query: 185 TVNCIAPGFIDTDMTK-VLGEQQTAALLQQIPLGRLGAPEDIAAAVAFLASPQAAYITGT 243 VN I PG I TD+ K L E++ A + + IPL RLG +DI A FL S + Y TG Sbjct: 179 RVNSITPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGI 238 Query: 244 TLHVNGGMYMN 254 TL VNGGM ++ Sbjct: 239 TLDVNGGMLIH 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,767 Number of extensions: 27491 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 48 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)