BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0092.0056.p (371 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 673 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 157 2e-39 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 101 1e-22 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/413 (82%), Positives = 361/413 (87%), Gaps = 42/413 (10%) Query: 1 LSRSRERRVVITGLGCISPVGNSIADAWGAVKEGKSGIATITKFDAAPFSTHFAGEVKGF 60 +SR+RERRVVITGLGCISPVGN++AD W A+KEGKSGIAT+TKFDA PF+THFAGEVKGF Sbjct: 1 MSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 Query: 61 NIEDYIPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDENAERIGVIIGSGIGGLPLIEQ 120 NIEDYIPAKEARHMDTFIHFGMAAG+QA QDSGL VTDENAERIGV+IGSGIGGLPLIE+ Sbjct: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEE 120 Query: 121 THEELTNRGPRRISPFFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIGSASRM 180 TH ELTNRGPRRISPFFIPASIINMISGNLSIK+GLKGPNLAIVTACTTGLHCIGSA+RM Sbjct: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 Query: 181 IQYGDADVMIAGGAESSVSPLGIGGFASA------------------------------- 209 I YGDADVM+AGGAESSVSPLGIGGFASA Sbjct: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 Query: 210 -----------XRGAKIYAEVLGFGMSGDAYHMTAPNLDGPRRCVVSALRDAGVNPDEVQ 258 RGAKIYAE+LGFGMSGDAYHMTAPNLDGPRRCV++ALRDAGVNPDEVQ Sbjct: 241 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ 300 Query: 259 YLNAHGTSTPLGDKNETDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFTVLALH 318 YLNAHGTSTPLGDKNE+DAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLE+V TVLA+H Sbjct: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 Query: 319 NQISPPTINIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGKV 371 NQ+SPPT+NIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLV GK+ Sbjct: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 186/417 (44%), Gaps = 52/417 (12%) Query: 1 LSRSR-ERRVVITGLGCISPVGNSIADAWGAVKEGKSGIATITKFDA-APFSTHFAGEVK 58 ++R+R ERRVV+TG+ ISP+G A +K G + + + +D T Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 59 GFNIEDYIPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDE---NAERIGVIIGSGIGGL 115 F++ + K R M A A D+GL+ D+ + ++G+ GS G Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLL--DDPLLKSGQLGIAYGSSAGTP 118 Query: 116 PLIEQTHEELTNRGPRRISPFFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIG 175 I + R I+ + + N+ + +G+ G + +ACT+G IG Sbjct: 119 NAIADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIG 178 Query: 176 SASRMIQYGDADVMIAGGAES----------------------SVSP-----------LG 202 A I+ G M+AGGAE V+P LG Sbjct: 179 YAYETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLG 238 Query: 203 IGGFA--------SAXRGAKIYAEVLGFGMSGDAYHMTAPNLDGPRRCVVSALRDAGVNP 254 G + + RGA I+AE++GFG + D H+T PN + + AL DAG+ Sbjct: 239 EGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPA 298 Query: 255 DEVQYLNAHGTSTPLGDKNETDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFTV 314 + Y+NAHGT T GD ET A FG ++S KS GH LG G LE+ ++ Sbjct: 299 SAIGYINAHGTGTRQGDVAETQATARVFGK---ATPISSLKSYMGHTLGACGALEAWLSI 355 Query: 315 LALHNQISPPTINIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGK 370 + + PTIN+ + DP+C +LDY R ++ + + N+F FGG N +L+F + Sbjct: 356 EMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 170/402 (42%), Gaps = 49/402 (12%) Query: 9 VVITGLGCISPVGNSIADAWGAVKEGKSGIATITKFDAA---PFSTHFAGEVKGFNIEDY 65 + + LG + P+G++ + G SG+ ++ A P + + +D+ Sbjct: 3 LYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPEDDH 62 Query: 66 IPAKEARHMDTFIHFGMAAGMQAFQDSGLVVTDENAERIGVIIGSGIGGLPLIEQTHEEL 125 +P +E + +AA + + AERIG+++G+ G+ E Sbjct: 63 LPLRERSRNN---RLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGI--AEGEAAFA 117 Query: 126 TNRGPRRISP-FFIPASIINMISGNLSIKYGLKGPNLAIVTACTTGLHCIGSASRMIQYG 184 P + + + L + G GP +AC + I SA+R++ G Sbjct: 118 ARAASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMG 177 Query: 185 DADVMIAGGAESSVSPLGIGGFA-----SAXR---------------GAKIY-------- 216 D ++ GG ++ + I GF SA R GA ++ Sbjct: 178 LCDAVLCGGVDT-LCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAA 236 Query: 217 AEVLGFGMSGDAYHMTAPNLDG--PRRCVVSALRDAGVNPDEVQYLNAHGTSTPLGDKNE 274 ++ G+G S DAYH++AP+ +G + + ALR AG+ ++ Y+N HGT+TP D E Sbjct: 237 VQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAME 296 Query: 275 TDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLESVFTVLALHNQ----ISPPTINIFN 330 + ++A FG ++ V+STK TGH LG A +E+ L + + + PP + Sbjct: 297 SKVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGV 353 Query: 331 QDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLVFGK 370 DP Q + + NSF FGG+N LVF + Sbjct: 354 ADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,147,895 Number of extensions: 46653 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 5 Length of query: 371 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 284 Effective length of database: 1,207,925 Effective search space: 343050700 Effective search space used: 343050700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)