BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0049.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...   399   e-112
gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   114   7e-27

>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  399 bits (1024), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/208 (88%), Positives = 199/208 (95%)

Query: 2   LRQPTWIEYSGSFFPVIALVFFLRSFLYEPFKIPSSSMVPTLLVGDLILVNKYTYGIRLP 61
           L+QP WIEYSGSFFPVIALVF LRSFLYEPFKIPSSSMVPTLLVGDLILVNK+TYGIRLP
Sbjct: 75  LKQPAWIEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLP 134

Query: 62  IVNKKIISINEPQRGDVMVFKYPKDTAVDYIKRVVGVPGDKIVYKNKHLTVNGKEVSYKP 121
           I+NKKII +N+PQRGDVMVFKYPKD +VDYIKRVVGVPGDKIVYKNK LTVNG+++SYK 
Sbjct: 135 IINKKIIEVNQPQRGDVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKA 194

Query: 122 LPDYLDDENLTYYKQWQEDLTGVDHKILTDERAPNFVPNPDAFPQHELCSYNTEGFACTV 181
           LPDYLD+ENLTYYKQWQE+LTGV+HKILTDERAPNFVPNPDAFP HELC+YN EGFACTV
Sbjct: 195 LPDYLDEENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFACTV 254

Query: 182 PAGQYFMMGDNRDNSLDSRYWGFVPDQN 209
           P G+YFMMGDNRDNSLDSRYWGFVPDQN
Sbjct: 255 PPGEYFMMGDNRDNSLDSRYWGFVPDQN 282


>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  114 bits (285), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 21/195 (10%)

Query: 13  SFFPVIALVFFLRSFLYEPFKIPSSSMVPTLLVGDLILVNKYTYGIRLPIVNKKIISINE 72
                IAL+   RS + +   +PS SM+PT+ +GD ILV+K  Y +RLP+ +  ++ + E
Sbjct: 14  GLLAFIALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLRLPLTHISLLRLGE 73

Query: 73  PQRGDVMVFKYPKDTAVDYIKRVVGVPGDKIVYKNKHLTVNGKEVSYKP---LPDYLDDE 129
           PQRGD++     +      +KR+VG+PGD +  ++  L +NG+   Y P    P+  D  
Sbjct: 74  PQRGDIVTID-SRQAGELLVKRIVGLPGDVVELRDNVLFINGQPAHYHPAAEAPEAGDGS 132

Query: 130 NLTYYKQWQEDLTGVDHKILTDERAPNFVPNPDAFPQHELCSYNTEGFACTVPAGQYFMM 189
           +   Y+   E    ++H +      P+              SY        VP G Y M+
Sbjct: 133 DQAAYR--DERYGAMEHAVRLSAAHPSL-----------HSSYGP----VVVPPGHYMML 175

Query: 190 GDNRDNSLDSRYWGF 204
           GDNRDNS+DSRY+GF
Sbjct: 176 GDNRDNSMDSRYFGF 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,934
Number of extensions: 29799
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)