BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0047.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310646|ref|YP_003774738.1| benzoate membrane transport pro...   248   4e-67

>gi|300310646|ref|YP_003774738.1| benzoate membrane transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  248 bits (634), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 144/321 (44%), Positives = 207/321 (64%)

Query: 2   GVTCIGLSLYYRTPVVTAWSTPGAALLITGLAGLSMPQAIGVFMFSAALVTICGVTGLFA 61
           GV+ + LS ++R P++TAWS PG ALL++   G+SMP+ +G ++ +A L+ + GVTG F 
Sbjct: 62  GVSGLLLSGWFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFE 121

Query: 62  RAMNRIPISIAAAMLAGILARFGMDVFVAMKLEFGLVLLMFAAYLFGKRWLPRYAIIVVL 121
           + +  IP  IAA M+AGIL +FG+  F +      +V  M AAYL G+RW PRY I+VV 
Sbjct: 122 KILAFIPKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRYGIVVVA 181

Query: 122 ALGTTFAGAQGLLKFDSFHLALATPEFVMPEFTLTSLLGVGIPLFVVTMASQNAPGVAIM 181
             G   A A G     +  L LA P F+ P F++     + +PL +V++  Q  PG+A++
Sbjct: 182 LTGFAVAFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVL 241

Query: 182 RASGYNTPVSPLITWTGLTTLVLAPFGCFSICLAAITAAICMGKEAHEDPSRRYMASVAA 241
           + +GY+     ++T TGL +L  A FG  +I LAAITA++C GK+AH DP +RY+A +A 
Sbjct: 242 QLAGYHPSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIAN 301

Query: 242 GVFYLIAGVSGATVVALFAAFPKALIMAIAGLALFGTIANGLTVAMANEKQREAALITFL 301
           GVFYLI G   A++V LF AFPK LI A+AGLAL G I + + +        E ++ITFL
Sbjct: 302 GVFYLIGGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEGDYVEPSVITFL 361

Query: 302 VTASGVSLFGIGTAFWGLVAG 322
            TASG++LFG+G AFWG++ G
Sbjct: 362 ATASGMTLFGLGAAFWGVMVG 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 974,913
Number of extensions: 39130
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)