BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0044.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311265|ref|YP_003775357.1| beta-N-acetylhexosaminidase [He...   533   e-152

>gi|300311265|ref|YP_003775357.1| beta-N-acetylhexosaminidase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  533 bits (1372), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/336 (77%), Positives = 286/336 (85%)

Query: 17  QSRQPLGPVMLDVVGTTLTAEDIRRIRHPLTGGVILFARNYENRKQLMTLTQGIHAARPG 76
           Q+ +PLGPVMLDVVGT L A DI R++HPLTGGVILFARNYE+R QL+ LT  I  ARPG
Sbjct: 3   QAVKPLGPVMLDVVGTRLEAADIARLQHPLTGGVILFARNYESRAQLVALTSAIRQARPG 62

Query: 77  VLIAVDHEGGRVQRFRTDGFTHLPPMRALGELWDRDVLQATKVATAAGYVLASELRACGV 136
           +LIAVDHEGGRVQRFRTDGFT LP M  LG+LWDRDVLQATKVATA G+VLA+ELRACG+
Sbjct: 63  ILIAVDHEGGRVQRFRTDGFTRLPAMGQLGQLWDRDVLQATKVATATGFVLAAELRACGI 122

Query: 137 DLSFTPVLDLDFGGSSVIGTRSFHRDPRVVTLLAKSLNHGLALAGMANCGKHFPGHGYVT 196
           DLSFTPVLDLD+G S+VIG RSFHRDPRVVTL+AKSLNHGLALAGMANCGKHFPGHG+VT
Sbjct: 123 DLSFTPVLDLDYGASTVIGDRSFHRDPRVVTLMAKSLNHGLALAGMANCGKHFPGHGFVT 182

Query: 197 ADSHVDLPVDERPLKDILGDDAAPYDWLGMSLTAVMPAHVIYPKVDKHPAGFSKKWLEIL 256
           ADSHV +PVDER L +ILGDDA PYDWLGMSL AVMPAHVIYPKVD  PAGFSK WL +L
Sbjct: 183 ADSHVAIPVDERELDEILGDDATPYDWLGMSLAAVMPAHVIYPKVDAQPAGFSKVWLSML 242

Query: 257 RKDLGFQGVIFSDDLSMHGASVAGGALDGANAALHAGCDMVLMCNSPDKADQLLSGLQTR 316
           R+  GFQGVIFSDDLSMHGASVAGG L+ A AAL AGCD+ L+CNSPDKAD +L+GLQ  
Sbjct: 243 RERFGFQGVIFSDDLSMHGASVAGGPLEAAQAALDAGCDVALICNSPDKADAILAGLQGG 302

Query: 317 VSPASAARIAALVPQGAAPEWDELQQDQRFLAAKLL 352
              ASAAR A L+P G A  WD LQ D R+LAA+ L
Sbjct: 303 TDAASAARRATLLPCGEALAWDALQADPRYLAARAL 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,103,496
Number of extensions: 46332
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)