BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0040.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ...   286   7e-79
gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ...   233   1e-62

>gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  286 bits (733), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 141/163 (86%), Positives = 151/163 (92%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMPEITKAAG 60
           MD FQKEIDERTNLT+SNKFELLLFRLGTDP+G RSELFGINVFKIREIVPMP +TKAAG
Sbjct: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60

Query: 61  TRSPLLGMVNIRGQIISVIDLPAVVGCVPKSGLNILLVTEYARSTQAFAVESVDEIVRLE 120
           T+SP+LGMVNIRGQIISVIDLPAVVGCVPK+GLNILLVTEYARSTQAFAVESVDEIVRLE
Sbjct: 61  TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120

Query: 121 WSQVLSAESKAGGNFVTSIARLDDDISSGRLAQVLDVSGPLNE 163
           WSQVLSAE+ +GG FVTSIARLD D  + RLAQVLDV   L+E
Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHE 163


>gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  233 bits (593), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/165 (71%), Positives = 136/165 (82%), Gaps = 4/165 (2%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRS---ELFGINVFKIREIVPMPEITK 57
           MD+FQKEIDERTNLTS+NKFELLLFRLGT P G      EL+GINVFKIREIVPM +IT 
Sbjct: 1   MDSFQKEIDERTNLTSTNKFELLLFRLGT-PDGSTDKPGELYGINVFKIREIVPMMDITA 59

Query: 58  AAGTRSPLLGMVNIRGQIISVIDLPAVVGCVPKSGLNILLVTEYARSTQAFAVESVDEIV 117
           AAG RSP++GMVNIRGQ++SV+DLPAV GC    G NILL+TE+AR TQAFAVESV+EIV
Sbjct: 60  AAGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIV 119

Query: 118 RLEWSQVLSAESKAGGNFVTSIARLDDDISSGRLAQVLDVSGPLN 162
           RL+WSQVL A+S + G+ VTSIARLD ++  GRL QVLDV   LN
Sbjct: 120 RLDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILN 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,623
Number of extensions: 27255
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)