BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0037.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase ...   191   3e-50

>gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  191 bits (485), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 141/225 (62%), Gaps = 41/225 (18%)

Query: 13  AHASRYFPAIGIIVSFACAAVYWVAALWLPQVVAVLLSTAAGIYLTGAFHEDGFADVCDG 72
           AH++RYFP +G IV++A A VY +A  + PQ VAVLL TAAGI+LTGAFHEDGFAD+CDG
Sbjct: 46  AHSTRYFPLVGWIVAWATALVYLLAVQFWPQPVAVLLGTAAGIWLTGAFHEDGFADLCDG 105

Query: 73  FGGGMQPSRVLEIMRDSRVGAYGVIGIALLLGTKIAGLASLPALQVMPALLVAHPLSRCF 132
            GG +   R LEIMRDSR+G+YGVIG+ LL+ T++A LA+L   Q++ AL +AHPLSR  
Sbjct: 106 LGGAVSRERALEIMRDSRLGSYGVIGLVLLMLTRLAALAALQPWQILAALGIAHPLSRWL 165

Query: 133 AAALIWRMPYVREEGKVKPLAQNMSA---------------------------------- 158
           A  LIWRM YVREEGK K LAQ MS                                   
Sbjct: 166 ATCLIWRMDYVREEGKSKLLAQRMSTGEFLVATVWVVVPVIGTVALGLMSWQHIAMGCGL 225

Query: 159 -------XGRKFQRRIGGYTGDCLGAVQQFSEAAIYLGLLAAVSA 196
                     + QRR+GGYTGD LGAVQQ SE   YLG+LA++ A
Sbjct: 226 AALAALWLAYRLQRRLGGYTGDGLGAVQQLSETVFYLGVLASLPA 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 639,814
Number of extensions: 27497
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)