BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0036.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 prote...    91   8e-20

>gi|300311280|ref|YP_003775372.1| phosphoglycerate mutase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score = 90.5 bits (223), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 31/181 (17%)

Query: 1   MLLHLIRHPQPVIDKGLCYGSSDLAVTEE-------ECARVLEQVKPALPPHVPVYSSPL 53
           M L LIRHP+P ID+G CYGSSD+ V +E            L QV+   P    + +SPL
Sbjct: 1   MALLLIRHPRPRIDQGHCYGSSDVEVADEVWQASLAALLPSLLQVQ-QWPQRAAIVTSPL 59

Query: 54  QRCVFLAEPLATALNAGPVRYDPRXPPRARRDSRLVVLRRPTCAARSAR-FEEVCGLRAE 112
           +RC  LA+ LA AL   P+  +P              LR     A   R ++++    +E
Sbjct: 60  RRCAVLAQALADALRQ-PLVVEPD-------------LREMDFGAWELRAWDDIAW--SE 103

Query: 113 IDAWASDVVGYRPGGGENVLNVAQRVDAFCSDLQQRGQSQA------IVVCHAGTIRLLQ 166
           ++AW  D++ Y PGGGE +  VA+R+      L++  Q++A      IVVCHAG+IR+L+
Sbjct: 104 VEAWNQDLLHYAPGGGETLPAVARRMWRAWERLRRHAQAEADGVSDLIVVCHAGSIRMLR 163

Query: 167 A 167
           A
Sbjct: 164 A 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,160
Number of extensions: 17981
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)