BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0030.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   472   e-134
gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   379   e-106

>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  472 bits (1214), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/264 (87%), Positives = 246/264 (93%)

Query: 1   MKRVILFLVTNLAVMLVLSVTASILGINRYMTANGLNFGMLLMFCALMGFGGSFISLLLS 60
           MKRVILFLVTNLAVMLVLSVTAS+LG+NRY+TANGLNFGMLL+FC LMGFGGSFISL +S
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KTIAKWSTGARVIEHPQNSTEMWLVDTVNRLATRAGLTMPEVAVYDGPPNAFATGASKSN 120
           KTIAKWSTGARVIE PQNSTE+WL+ TV  LA RA L MPEVAVYDGPPNAFATGASKSN
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 SLVAVSTGLLQGMTREEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           SLVAVSTGLLQGMT++EVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180

Query: 181 SALRRNNEQSSGPGIGYMVTVVVCEIVFGILASIIVMYFSRQREYRADSGAAKLMGSPTP 240
           S LRRNNE++SGPGIGYMVTV VCEI+FGILASIIVMYFSRQREYRAD+GAA LMGS  P
Sbjct: 181 SFLRRNNEENSGPGIGYMVTVFVCEIIFGILASIIVMYFSRQREYRADAGAASLMGSNAP 240

Query: 241 MIGALRRLGGMEADGLPQNLNVLG 264
           MI ALRRLGGM++DGLPQNL   G
Sbjct: 241 MINALRRLGGMQSDGLPQNLQAAG 264


>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/300 (64%), Positives = 239/300 (79%), Gaps = 9/300 (3%)

Query: 1   MKRVILFLVTNLAVMLVLSVTASILGINRYMTANGLNFGMLLMFCALMGFGGSFISLLLS 60
           MKR++LF+ TN+AV++V+SV  S+LG++R++T +GLN  MLL+F  ++GF GS ISLL+S
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KTIAKWSTGARVIEHPQNSTEMWLVDTVNRLATRAGLTMPEVAVYDGPPNAFATGASKSN 120
           KT+AKWSTGARVI+ P N TE WL+ TV +LA RAG+ MPEVAVYDG PNAFATGA + +
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 SLVAVSTGLLQGMTREEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           +LVAVSTGLLQGMT++EVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VG+FVD
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFVD 180

Query: 181 SALRRNNEQSSGPGIGYMVTVVVCEIVFGILASIIVMYFSRQREYRADSGAAKLMGSPTP 240
           SALRRN++  SGPGIGY VTV+VC+IVFGI AS+IV +FSR RE+RAD+GAA+L+G+P P
Sbjct: 181 SALRRNSDD-SGPGIGYTVTVLVCQIVFGIGASLIVAWFSRHREFRADAGAARLLGTPQP 239

Query: 241 MIGALRRLGGMEADGLPQNLNVLGAGWNSPPAVMLWRRRFRRHCSEPASAWRTPVRQGQQ 300
           MI AL RLGG   +GLPQNL  LG   +  P VM     F  H   P    R    +GQ+
Sbjct: 240 MINALARLGGFSPEGLPQNLAALGI--SDKPGVM---ELFSTH---PPLEQRIAALRGQR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,048,016
Number of extensions: 43917
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)