BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0029.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...   230   6e-62
gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...    60   8e-11

>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  230 bits (586), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 144/167 (86%), Gaps = 2/167 (1%)

Query: 3   HPSSNTSPAKKRIAFIQASWHKEIVDQCRISFTAEIAKLGFAESGIDFFELPGAFEIPLH 62
           H S+ +S   +RIAFIQA WHK+IVDQCRI+FT E+AKLG+  + IDFFELPGAFEIPLH
Sbjct: 5   HLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIPLH 64

Query: 63  AKLLAKTGKYVGIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLDTEVPVFSAVLTPHHFH 122
           AK+LAKTG+Y GIVA+GLVVDGGIYRHDFVAQ+VI++LM VQLDTEVPVFSAVLTPHHFH
Sbjct: 65  AKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTPHHFH 124

Query: 123 SHGEHQQFFHEHFVVKGQEVARACADTVTKLARIEAGQGSVAVLNAA 169
           SH EH  +FH+HF+VKG+E A+ACA TV KLA++ A  G+ A LNAA
Sbjct: 125 SHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRA--GAQASLNAA 169


>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 60.5 bits (145), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 58/107 (54%)

Query: 14  RIAFIQASWHKEIVDQCRISFTAEIAKLGFAESGIDFFELPGAFEIPLHAKLLAKTGKYV 73
           RI  +QA +++++      +  AE+  LG A+  I    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQKMAETEQFD 75

Query: 74  GIVAAGLVVDGGIYRHDFVAQAVITSLMNVQLDTEVPVFSAVLTPHH 120
            ++A G V+ G  Y  + V+      +  + LD  VP+ +AVLT  +
Sbjct: 76  ALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLTTEN 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 441,707
Number of extensions: 15283
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)