BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0026.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311289|ref|YP_003775381.1| lipoprotein protein [Herbaspiri...   230   8e-62

>gi|300311289|ref|YP_003775381.1| lipoprotein protein
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  230 bits (586), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 143/181 (79%), Gaps = 7/181 (3%)

Query: 2   RRSLPLPFASTVLPLVTVALLAGCSTSKPSFYHQEDFSETDTYSRSFGGSDAAVCEAARR 61
           R  + L FA+T L L     LA C T K +FYHQE+FS+T  +SRSF GS+ AVCEAARR
Sbjct: 5   RLPVSLCFAAT-LSLT----LAACGT-KAAFYHQEEFSDTSAFSRSFPGSEKAVCEAARR 58

Query: 62  ALLGQGYIISKAQANIVDGTKSFQPEADQHVEIAFHIVCAGNGKADQNASVFVSATQDRY 121
           ALLGQGYII+KA  N +DG KSFQP +D+H+EIAFH+VCA NG   +++++FVSATQD Y
Sbjct: 59  ALLGQGYIITKATDNTMDGNKSFQPASDKHMEIAFHVVCASNGNG-KSSTMFVSATQDGY 117

Query: 122 ALKKTNNSASLGVGVLGSVSMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGED 181
            +KK+N+SASLGV VLGSVSMPF +SDDS+VRV+SETIRS+ FYDRFFGA ERYL    D
Sbjct: 118 GIKKSNSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSSDFYDRFFGAAERYLLVDVD 177

Query: 182 D 182
           D
Sbjct: 178 D 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 568,837
Number of extensions: 20736
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)