BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0024.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase [Her...    90   2e-19
gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase [Her...    76   2e-15

>gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 68/94 (72%)

Query: 4   QLGTFALLPQIVRAVKVPVIAAGGIADAAGVAAAKVLGAAGVQIGTSYMLTPEAFTSAPH 63
           Q+G+FALL  +V+  ++PVIAAGGI D  G+AAA  LGA  VQ+GT+++LT E+  +A +
Sbjct: 196 QIGSFALLRLLVQHTRLPVIAAGGIMDGHGIAAALQLGAQAVQMGTAFLLTRESNANASY 255

Query: 64  RAALKGPAADHTALTTLFTGGPARGIVNRLMREL 97
           RA LK P A HT +T   +G PARGIVNR M E+
Sbjct: 256 RALLKSPRAQHTRVTAAISGRPARGIVNRFMEEI 289


>gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%)

Query: 2   STQLGTFALLPQIVRAVKVPVIAAGGIADAAGVAAAKVLGAAGVQIGTSYMLTPEAFTSA 61
           ++ +GT AL+PQIV AV +PVIAAGGI D  G+AAA  LGA   Q+GT++++T E+   A
Sbjct: 194 ASMIGTLALVPQIVDAVALPVIAAGGIMDGRGIAAALTLGAQAAQLGTAFLMTAESPIHA 253

Query: 62  PHRAALKGPAADHTALTTLFTGGPARGIVNRLMRELGPLSSAAQVFPL 109
             +  ++      T  T  FTG PARGI+N  M  +G        +P+
Sbjct: 254 AWQEKIRLSTDTSTRTTRTFTGRPARGILNDFMLRMGRYEQELPAYPV 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,641
Number of extensions: 20996
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)