BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0020.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   124   3e-30
gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...    94   3e-21

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  124 bits (311), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 68/82 (82%)

Query: 43  KDMSKSKSKAARKSARQSKDAGDSPKARLGIIASGKSYLDVLEALSELGIDEDFAAEIGL 102
           +D     + A  ++ R ++   DSPKARLGIIASGKSYLDVLEALSELGIDE FAAEIGL
Sbjct: 266 QDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDEAFAAEIGL 325

Query: 103 RLFKVSMPWPLEPEGVREFAQG 124
           RLFKVSMPWPLEP+GVREFAQG
Sbjct: 326 RLFKVSMPWPLEPDGVREFAQG 347


>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score = 94.4 bits (233), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 3/83 (3%)

Query: 45  MSKSKSKAARKSARQSK---DAGDSPKARLGIIASGKSYLDVLEALSELGIDEDFAAEIG 101
           M   K  AA   AR +K      DSP+AR+GII +GKSYLD  +AL +LGIDE  A +IG
Sbjct: 259 MINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDIG 318

Query: 102 LRLFKVSMPWPLEPEGVREFAQG 124
           +RL+KV M WPLE EGVREFAQG
Sbjct: 319 IRLYKVGMTWPLEAEGVREFAQG 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 230,522
Number of extensions: 7045
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)