BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0018.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase [Herb...   293   7e-81
gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase [Herb...    65   3e-12

>gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  293 bits (750), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 142/187 (75%), Positives = 161/187 (86%)

Query: 19  PWPLLVATYNIHSAIGTDGRFAPERIARVLLDIGADVIALQEVPLGGSNSPDVLKVLQEA 78
           PWPL VATYNIH A+GTDGRFAPER+A VL ++ ADV+ALQEVPLGG++  DVL +L+  
Sbjct: 33  PWPLTVATYNIHGAVGTDGRFAPERVAAVLDELQADVVALQEVPLGGADQVDVLALLRAH 92

Query: 79  TGFHAVEGPTEDVPQRRYGNAVLSRYPVLATRAIDLSFGSREARGALDADLDCHGQPLRV 138
           TG  A EGPT + P RRYGNAVLSRYP+LAT +IDLSFGSRE RGALDAD+DC GQ LRV
Sbjct: 93  TGMFAAEGPTMESPARRYGNAVLSRYPILATESIDLSFGSREPRGALDADIDCRGQLLRV 152

Query: 139 VATHLGLRPAERRDQIRRLLQAFDTDRMPVILMGDVNEWFVWGRPLRWLVSHFEAAPAPR 198
           VATHLGL+PAERR QI+RLLQAFDT+  PVIL+GDVNEWF+WGR LRWLV HFEAAPAP 
Sbjct: 153 VATHLGLKPAERRAQIKRLLQAFDTNDAPVILLGDVNEWFMWGRTLRWLVGHFEAAPAPP 212

Query: 199 TFPARWP 205
           TFP+RWP
Sbjct: 213 TFPSRWP 219


>gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 17/171 (9%)

Query: 22  LLVATYNIHSAIGT-DGRFAPERIARVLLDIGADVIALQEVPLGGSNSPDVLKVLQE--- 77
           L VATYNIH  + +  GR     + + L  +  D++ LQEV   G +  + L+       
Sbjct: 3   LRVATYNIHKGVTSFAGRPRILALKQALAQLDPDILFLQEVQ--GRHDLNALRHASNWPQ 60

Query: 78  --------ATGFHAVEGPTEDVPQRRYGNAVLSRYPVLATRAIDLSFGSREARGALDADL 129
                       HA  G         +GNA++SR+ + + R  D+S  + E+RG L   +
Sbjct: 61  QGQHEYLAGDTHHAAYGMNAVYDHGHHGNALISRFEIASIRNQDVSDHAYESRGILHCVV 120

Query: 130 DCHGQPLRVVATHLGLRPAERRDQIRRLLQAFDTDR---MPVILMGDVNEW 177
              G  +     HLGL    RR QI  L+QA  T      P+++ GD N+W
Sbjct: 121 PVEGVEVHCYVIHLGLFAGGRRRQIDALIQAVSTSSPPDAPLLIAGDFNDW 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 822,897
Number of extensions: 37064
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)