BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0017.p
         (654 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311791|ref|YP_003775883.1| phosphatidylserine/phosphatidyl...   820   0.0  

>gi|300311791|ref|YP_003775883.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/669 (62%), Positives = 493/669 (73%), Gaps = 21/669 (3%)

Query: 2   PGGASDGYPEGLGDFLNALIEERPQLHVYILNWDFAMLYALEREWPPAYKHGWRRRRRLY 61
           P G+ DG P  LGD L+AL+E +P LH+ +LNWD+AMLYALEREW    K G  R +RL+
Sbjct: 76  PQGSDDGLPAQLGDLLHALVERQPDLHIRVLNWDYAMLYALEREWMMVRKPGRPRNKRLH 135

Query: 62  FHMDASHPVGASHHQKIVVVDDKLAFAGGIDLTRNRWDTPEHAPDQPLRRDIDGKAYGPF 121
           F  DA HPVGASHHQKIVV+DD+LAF GG+DLTR RWD  EH PD PLRRD D + Y PF
Sbjct: 136 FRTDARHPVGASHHQKIVVIDDQLAFVGGLDLTRCRWDNQEHLPDHPLRRDPDDRPYAPF 195

Query: 122 HDVQAMLDGEAAAALGELARTRWSRAGCKAALAQNKTD-------------GGDDLWPAG 168
           HDVQAM DGE A A+G LAR RW+ AG      +  TD                D WP  
Sbjct: 196 HDVQAMADGEVARAMGVLARRRWALAGYAEKSTEKHTDTTEARATAAESTLAASDPWPPA 255

Query: 169 VEPDLSDVEIGIARTEPEREGVAGVYEIRRLYLDAIAAARHALFFENQYFTSNVLHDALA 228
             PDL DV IGI+RTEP  E   GVYE+R LYLDAIA AR  LFFENQYFTSNVL +AL 
Sbjct: 256 FVPDLQDVMIGISRTEPAYEDRPGVYEVRELYLDAIAEARQHLFFENQYFTSNVLAEALG 315

Query: 229 ARLAEADAPEVVVVSPQNQSGWLEQATMGHLRARIHQRLKAA--DQ----HGRYRMYCPR 282
           ARL E D PEV V+SP+ QSGWLEQATMG LRARIH RLKAA  DQ      RY+MYCP 
Sbjct: 316 ARLREPDGPEVAVISPRTQSGWLEQATMGALRARIHHRLKAALADQGEGAERRYQMYCPH 375

Query: 283 LAS-EQDGCLNVHSKVFAVDDHLFCVGSANMSNRSMAYDTECNLVIEAHGDATQQARIRT 341
           L   E D CLNVHSKVFA+DD LF VGSANMSNRSM +DTECNL IE  GDA +QA++R 
Sbjct: 376 LPGLEDDCCLNVHSKVFAMDDRLFSVGSANMSNRSMGFDTECNLSIEVQGDAAKQAQVRQ 435

Query: 342 AIADMRNRLLAEHLNVDTQTVRQEIAGRSSLHAAITSL-QSEGRTMAPLDPVVLPQIEAI 400
            IA +RNRLL EHL V  Q V+Q +     LHAAI +L Q E R++ PLDP ++P+++A+
Sbjct: 436 VIATLRNRLLGEHLGVPAQAVQQAMEDSGGLHAAIDALTQPEARSLQPLDPRLIPELDAV 495

Query: 401 MPDKVMFDPETPINPDELIAQFVPAHARKPVPRRLIGLGVFGILLLALAVAWRFTPLREW 460
             D  +FDPE PI+PDE++  +VP  ARKPVPRR+IGLGV  +LL+A A+AWRFTPLREW
Sbjct: 496 TQDNAVFDPERPISPDEIVDAYVPRSARKPVPRRMIGLGVLAVLLVAFALAWRFTPLREW 555

Query: 461 LNLSSLIALARGLEALPFTPLAVMAVYLVAGMLMFPVTLLIAVTGIVFGPFYGVLYALAG 520
           +NL+SLIALAR ++ LPF+PL VM  ++VAGMLM P+T+LIAV G+VFGP  G LYA  G
Sbjct: 556 INLNSLIALARSVDKLPFSPLIVMTTFVVAGMLMVPITVLIAVAGVVFGPLNGGLYAAVG 615

Query: 521 SLLSALAGFGFGVWLGRETLQQLLGRRVNSMSRRFARRGIPAMVVIRLLPVAPFTVANVV 580
             LSAL GFG G WLG + L+ LLG R+N++SRRFA+RGI AM V+RLLP+APFT+ NVV
Sbjct: 616 VGLSALLGFGVGHWLGHDALRDLLGPRINNLSRRFAQRGIAAMAVVRLLPIAPFTIVNVV 675

Query: 581 AGVSHLGLRDYLIGTFLGMAPGIVVTVAFAHNLAEAIRHPSLATIALLAGMGVLLIGMAL 640
           AG SHL LRDYL+GT LGM+PGIV+TV F+HNLAEAIRHPSL T+ +L  + V L+ +A 
Sbjct: 676 AGASHLRLRDYLLGTLLGMSPGIVLTVVFSHNLAEAIRHPSLETVLVLVAVTVALMLVAF 735

Query: 641 GLQKLLSPQ 649
           GLQKL  P+
Sbjct: 736 GLQKLFRPR 744


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,997,187
Number of extensions: 81752
Number of successful extensions: 295
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 563
Effective length of database: 1,188,985
Effective search space: 669398555
Effective search space used: 669398555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)