BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0092.0011.p (173 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine k... 80 6e-17 gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine... 76 2e-15 gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine... 75 3e-15 gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 59 2e-10 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 845 Score = 80.5 bits (197), Expect = 6e-17, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 9/165 (5%) Query: 11 SRAAGGHVELESTLGVGTTVSIFLP--AAEGASQTPEQAVAPAAMKPLK---LLLVEDNL 65 +R +GG V L S +G GTTVSI+LP +G Q A+ A +L+V+D Sbjct: 671 ARQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEA 730 Query: 66 DVADGIITLLQTAGHTVTHMKNAMDAEQFLLDNQ-VELVISDIHMPGGITGIALAKKLKL 124 + + +L AG+ V ++ A + L Q ++L+I+D+ +PGG+ G +A + Sbjct: 731 SIRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRA 790 Query: 125 SHPALPVILISGYAEDL---QSAMKSGFKVVSKPFSLESINRHLQ 166 + P L V+ I+GYAE+ ++ G ++++KPF +E++ R +Q Sbjct: 791 ARPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQ 835 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 552 Score = 75.9 bits (185), Expect = 2e-15, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 12 RAAGGHVELESTLGVGTTVSIFLPAAE----GASQTPEQAVAPAAMKPLKLLLVEDNLDV 67 + +GG V + S GTTV+I+ PA + G + ++ + + +L+V+D L+V Sbjct: 383 KQSGGSVRITSGAEGGTTVTIYFPATQDQVGGGFEYDNRSQSQGGQE--HILVVDDRLEV 440 Query: 68 ADGIITLLQTAGHTVTHMKNAMDAEQFLLDNQ-VELVISDIHMPGGITGIALAKKLKLSH 126 A+ T+L++ G+ V+ + + +A Q + + V+L+ +D+ MPG + G+ LA++ K Sbjct: 441 AELAQTMLESLGYRVSMVNSPAEALQLIRSGRPVDLLFTDLIMPGSMNGVVLAREAKRML 500 Query: 127 PALPVILISGYA-EDLQSAMKSG-FKVVSKPFSLESINRHLQIDAD 170 P + V+L +GYA E L+ G F V+ KP+ + + R ++I D Sbjct: 501 PTIKVLLTTGYASESLERHGADGEFPVLDKPYRHDELARKIRIVLD 546 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 75.1 bits (183), Expect = 3e-15, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 9/162 (5%) Query: 14 AGGHVELESTLGVGTTVSIFLP--AAEGASQT---PEQAVAPAAMKPLKLLLVEDNLDVA 68 +GG V + S LG G V I+LP EG PE++ PAA +L+V+D V Sbjct: 516 SGGTVRIYSELGQGAMVCIYLPRHVGEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVR 575 Query: 69 DGIITLLQTAGHTVTHMKNAMDAEQFLLDNQ-VELVISDIHMPGGITGIALAKKLKLSHP 127 + +L+ G++V ++ A + + Q ++L+++D+ +P G+ G LA ++ P Sbjct: 576 MVTVEVLRDLGYSVLEAEDGPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADAIRAPRP 635 Query: 128 ALPVILISGYAEDL---QSAMKSGFKVVSKPFSLESINRHLQ 166 LPV+ ++GYAE+ ++ G +V++KPF+ + + R ++ Sbjct: 636 DLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADVLARRVK 677 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 59.3 bits (142), Expect = 2e-10, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 12 RAAGGHVELESTLGVGTTVSIFLPAAEGASQTPEQAVAPAAMKPLK-------LLLVEDN 64 + + GH+ + S G GTT+ I+ P + ++ V ++ L +L+VED+ Sbjct: 929 KQSKGHISIHSEQGKGTTIRIYFP------RCLDEEVRIDEVRDLTVHGGDETILVVEDD 982 Query: 65 LDVADGIITLLQTAGHTVTHMKNAMDAEQFLLDN-QVELVISDIHMPGGITGIALAKKLK 123 ++ +I L + G+ V N A + L ++LV +D+ MPG + LA++ + Sbjct: 983 PNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQQAR 1042 Query: 124 LSHPALPVILISGYAEDL---QSAMKSGFKVVSKPFSLESINRHLQ 166 L P + ++ SGY D + + +G +++SKP+ + + + ++ Sbjct: 1043 LLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIR 1088 Score = 56.2 bits (134), Expect = 1e-09, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Query: 56 LKLLLVEDNLDVADGIITLLQTAGHTVTHMKNAMDAEQFLLDNQVELVISDIHMPGGITG 115 L+LL+VEDN+D + LL+T GH + + +A Q L + +++ +D+++P G++G Sbjct: 1164 LRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDVNLP-GMSG 1222 Query: 116 IALAKKLKLSHPALPVILISGYAEDLQSAMKSGFKVVSKPFSLESINRHL 165 + LAK P L VI SGY + + + KP+ ++ + L Sbjct: 1223 VELAKAALGRFPDLAVIFASGYGTMVARNVGFAAHALPKPYDIDQLQEIL 1272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 476,487 Number of extensions: 15746 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 5 Length of query: 173 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 94 Effective length of database: 1,245,805 Effective search space: 117105670 Effective search space used: 117105670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)