BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0092.0007.p (203 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311290|ref|YP_003775382.1| hydrolase or acyltransferase [H... 149 2e-37 gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herb... 122 2e-29 gi|300313186|ref|YP_003777278.1| short-chain dehydrogenase [Herb... 69 3e-13 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 67 1e-12 gi|300313264|ref|YP_003777356.1| short-chain alcohol dehydrogena... 62 3e-11 >gi|300311290|ref|YP_003775382.1| hydrolase or acyltransferase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/116 (65%), Positives = 82/116 (70%) Query: 87 RIFAVNAIGPMLCAQQAIRRMSYRHQGRGGAXTEEAALYIRTISASFGPHTDEEWHKLAS 146 R +N IGP + R Y Q EEAA YIRTISASFG H+DEEWHKLA Sbjct: 125 RRLVLNDIGPSINGAALARIGDYIGQDVRFDSFEEAAQYIRTISASFGQHSDEEWHKLAK 184 Query: 147 DVLRQDEEGKWKRHYDLRLAEPFKAMTPEAASVGEAMLWAAYDAIRCPTLLVRGAQ 202 DVLRQ+E+G+W RHYDL LA PFK TPEAAS E MLWAAYDAIRCPTLLVRGAQ Sbjct: 185 DVLRQNEQGQWVRHYDLALALPFKQTTPEAASAAEQMLWAAYDAIRCPTLLVRGAQ 240 >gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 59/117 (50%), Positives = 82/117 (70%) Query: 1 MAAAQGYDVAISYVQDESAALAVVSDVEAAGRRALPVRADSADPEQVARLFAGIDREFGR 60 +A +GY VA++YV + +AA AVV+ ++AAG RA+ V D A E V +LFA +D E GR Sbjct: 24 LAGQRGYAVAVNYVTNRAAADAVVAQIQAAGGRAIAVGGDVAREEDVLQLFATVDGELGR 83 Query: 61 IDVLVNNAAILQRQSRLEDIGFERMQRIFAVNAIGPMLCAQQAIRRMSYRHQGRGGA 117 + LVNNA +L QSRLED+ ER+ R+ N G +LCA++A++RMS RH G+GGA Sbjct: 84 VTALVNNAGVLDHQSRLEDMSAERINRVLIANVTGSLLCAREAVKRMSTRHGGQGGA 140 >gi|300313186|ref|YP_003777278.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 12/117 (10%) Query: 3 AAQGYDVAISYVQDESAALAVVSDVEAAGRRALPVRADSADP---EQVARLFAGIDREFG 59 AA+G VA +YV A A+VS V+A G RAL ++ADSAD +Q RL A FG Sbjct: 38 AAEGATVAFTYVSSPDKAQALVSSVQAKGGRALAIQADSADAAALQQAIRLAA---ETFG 94 Query: 60 RIDVLVNNAAILQRQSRLEDIGFERMQRIFAVNAIGPMLCAQQAIRRMSYRHQGRGG 116 R+D+LVNNA +L L+ E + R AVN + Q+A R M G GG Sbjct: 95 RLDILVNNAGVLA-MGPLDQFKLEDLDRTLAVNVRSVFVATQEAARYM-----GEGG 145 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 3 AAQGYDVAISYVQDESAALAVVSDVEAAGRRALPVRADSADPEQVARLFAGIDREFGRID 62 AA+G+ V ++ + ++A+ + AAG RA P++ D PE +A FA I++++GR D Sbjct: 29 AAKGHTVLVADINLDAAS-KTADALVAAGHRAAPLQMDLGSPESIAAAFAHIEKDYGRCD 87 Query: 63 VLVNNAAILQRQSRLEDIGFERMQRIFAVNAIGPMLCAQQAIRRMSYRHQGR 114 VLVNNA + + S L D E + VN G +L Q A R M + GR Sbjct: 88 VLVNNAGVARTYSFL-DYPLENWLQTMNVNVTGVLLAGQHAARLMVKQQWGR 138 >gi|300313264|ref|YP_003777356.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Query: 31 GRRALPVRADSADPEQVARLFAGIDREFGRIDVLVNNAAILQRQSRLEDIGFERMQRIFA 90 G AL V AD DP V +LFA FGR+D+L NNA I LE++ E+ + Sbjct: 56 GPNALVVAADVTDPASVKQLFAKTRERFGRLDMLFNNAGIFAPPVSLEELSVEQWKAAVD 115 Query: 91 VNAIGPMLCAQQAIRRMSYRHQGRGGAXTEEAALYI---RTISASF 133 +N G LC+Q+A R M + RGG ++ R SAS+ Sbjct: 116 INLTGVFLCSQEAFRIMKDQSP-RGGRIINNGSISAHAPRPFSASY 160 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,126 Number of extensions: 24824 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 8 Length of query: 203 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 122 Effective length of database: 1,236,335 Effective search space: 150832870 Effective search space used: 150832870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)