BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0092.0006.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311290|ref|YP_003775382.1| hydrolase or acyltransferase [H...   497   e-142
gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamil...    86   3e-18

>gi|300311290|ref|YP_003775382.1| hydrolase or acyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  497 bits (1280), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/300 (80%), Positives = 260/300 (86%), Gaps = 12/300 (4%)

Query: 1   MTQAVLKTVQCISPSGLHSMAYKEWGDPHNPNVLVCVHGVTRVSDDFDVMARDLCDTYRV 60
           MT+AV+KTVQCISP+GLH+MAYKEWGD  NPNVLVCVHGVTRVSDDFD MAR+LCDTYRV
Sbjct: 1   MTEAVVKTVQCISPAGLHTMAYKEWGDARNPNVLVCVHGVTRVSDDFDRMARELCDTYRV 60

Query: 61  VCPDVVGGGGGAPRIMLGGGGGSGRLGNPQHYAIPQYVSDMVTLLARLDAESVDWFGTSM 120
           +CPDVVG G             SGRL NPQ Y +PQYVSDMVTLLARLDA+ VDWFGTSM
Sbjct: 61  ICPDVVGRGR------------SGRLANPQFYTVPQYVSDMVTLLARLDAQIVDWFGTSM 108

Query: 121 GGLIGMGLASLPDNPVRRLVLNDIGPSINGSALARIGEYIGQDVRFATFEEAALYIRTIS 180
           GGLIGM LASLP NP+RRLVLNDIGPSING+ALARIG+YIGQDVRF +FEEAA YIRTIS
Sbjct: 109 GGLIGMALASLPGNPIRRLVLNDIGPSINGAALARIGDYIGQDVRFDSFEEAAQYIRTIS 168

Query: 181 ASFGPHTDEEWHKLASDVLRQDEEGKWKRHYDLRLAEPFKAMTPEAASVGEAMLWAAYDA 240
           ASFG H+DEEWHKLA DVLRQ+E+G+W RHYDL LA PFK  TPEAAS  E MLWAAYDA
Sbjct: 169 ASFGQHSDEEWHKLAKDVLRQNEQGQWVRHYDLALALPFKQTTPEAASAAEQMLWAAYDA 228

Query: 241 IRCPTLLVRGAQSDLLLPEVAQAMTQRGPKAKLVELEGVGHAPTFMHARQIQVAKDFLLG 300
           IRCPTLLVRGAQSDLLLPEVAQ MT+RGPKAKLVEL  VGHAPTFMHA QI+VA+ FLLG
Sbjct: 229 IRCPTLLVRGAQSDLLLPEVAQEMTRRGPKAKLVELPDVGHAPTFMHAPQIEVARQFLLG 288


>gi|300313233|ref|YP_003777325.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 30/282 (10%)

Query: 24  EWGDPHNPNVLVCVHGVTRVSDDFDVMARDLCDTYRVVCPDVVGGGGGAPRIMLGGGGGS 83
           EWGDP    +L+ +HG+    + F  +A+ L   YR +  D  G G            G+
Sbjct: 19  EWGDPQGFPLLL-LHGIRGYGETFGDLAQRLPPGYRCIALDQRGRGQS------DWDAGA 71

Query: 84  GRLGNPQHYAIPQYVSDMVTLLARLDAESVDWFGTSMGGLIGMGLASLPDNPVRRLVLND 143
                  +Y    YV+D+  L+ARL+    D  G SMGG+  +  A+     VRRL++ D
Sbjct: 72  -------NYYTDAYVADVEALVARLNLRQFDLLGHSMGGINAIVYAARHPAKVRRLIIED 124

Query: 144 IGPSI--NGSALARI-GEYIGQDVRFATFEEAALYIRTISASFGPHTDEEWHKLASDVLR 200
            GP    N     RI  E       FA+++EA+ ++R +  S    T+E   +   ++L+
Sbjct: 125 AGPGAFENSPGATRIRRELATTPSHFASWDEASTFMRALRPSV---TEEARQQRLHNMLK 181

Query: 201 QDEEGKWKRHYDLRLAEPFKAMTPEAASVGEAMLWAAYDAIRCPTLLVRGAQSDLLLPEV 260
              +G +   YD  +      ++P+ + V +  L     A+ CPTL+VRG +SD L  E+
Sbjct: 182 PAAQGGYTWRYD-HVGISSTRLSPDLSRVVD--LRPHIMALMCPTLVVRGERSDYLSAEM 238

Query: 261 AQAMTQRGPKAKLVELEGVGHAPTFMHARQ----IQVAKDFL 298
           A  M Q   +     +   GH   ++H  Q     +V + FL
Sbjct: 239 AAEMRQLNARILTSTIADAGH---YIHDDQPEAFAEVVRQFL 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,937
Number of extensions: 36058
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)