BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0092.0001.p (212 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 116 2e-27 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 75 4e-15 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 65 3e-12 gi|300312737|ref|YP_003776829.1| transcription regulator protein... 65 4e-12 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 64 7e-12 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 87/149 (58%) Query: 34 EHLRNLIVEAVLMPGTKLNERELCETLGISRTPLREALKVLAAEGLIEISPNRGASVSKM 93 E + LI + L PG L+E L E G+SRTP+REAL LA+ G++E+ P RGA V+++ Sbjct: 13 ESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEI 72 Query: 94 TETEIWETFELMSGLEAMSGELACERITPVEVAEIKALHYAMLACKAQNDLPGYYSRNQA 153 ++ E FE+M+ EAM G LA R+TP E AE+ A H A A + ND Y+ N+A Sbjct: 73 GPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDANDPDAYFYLNEA 132 Query: 154 IHNKINEAARNSVLHQTYLGLNRRLQALR 182 H+ I + N L L+RRL+ R Sbjct: 133 FHDHIYAGSHNGFLADQARALHRRLRPYR 161 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%) Query: 19 ALPKLERQ--RLHDTVVEHLRNLIVEAVLMPGTKLNERELCETLGISRTPLREALKVLAA 76 +LP +R+ L + V +++ IV+ + PG+K++E EL T GISR PLREA+ L Sbjct: 6 SLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEG 65 Query: 77 EGLIEISPNRGASVSKMTETEIWETFELMSGLEAMSGELACERITPVEVAEIKALHYAML 136 + L+ P+ GA V +T + E F++ LE M+ LA +R++ E+ E++ + Sbjct: 66 QNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHE 125 Query: 137 ACKAQNDLPGYYSR--NQAIHNKINEAARNSVLHQTYLG 173 +A GYY + + H KI +A+ N +L + G Sbjct: 126 KDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCG 164 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 12/148 (8%) Query: 26 QRLHDTVVEHLRNLIVEAVLMPGTKLNERELCETLGISRTPLREALKVLAAEGLIEISPN 85 +R + V E LR +V PGT+L E L LG+SRTP+R AL+ L +GL Sbjct: 2 ERGKEKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAG 61 Query: 86 RGASVSKMTETEIWETFELMSGLEAMSGELACERITPVEVAEIKALHYAMLA-CKAQNDL 144 +G V+ ++ +I ETF+L LE + LA ER MLA + N+ Sbjct: 62 QGIHVAAWSDWDIEETFQLRMLLEPYAASLAAERGDE-----------KMLALLRESNEK 110 Query: 145 PGYYSRNQAIHNKINEAARNSVLHQTYL 172 ++ +H+ A NS+ H+T L Sbjct: 111 MAQAIKSGGLHSVEKIQAANSIFHRTIL 138 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 60/111 (54%) Query: 22 KLERQRLHDTVVEHLRNLIVEAVLMPGTKLNERELCETLGISRTPLREALKVLAAEGLIE 81 K++ L + V + L LI + PG KL + L + LG S P+REA++ LAAEG +E Sbjct: 14 KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALE 73 Query: 82 ISPNRGASVSKMTETEIWETFELMSGLEAMSGELACERITPVEVAEIKALH 132 I PNR V MT+ + E ++ LE ++ E A I V + ++ LH Sbjct: 74 ILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLH 124 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 64.3 bits (155), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 9 NQTEKPSSPAALPKLERQR---LHDTVVEHLRNLIVEAVLMPGTKLNERELCETLGISRT 65 ++ +P++PA P ER + + + + + + I+E L P TKL E+ LC+ +R Sbjct: 5 SKASRPATPARAPARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARH 64 Query: 66 PLREALKVLAAEGLIEISPNRGASVSKMTETEIWETFELMSGLEAMSGELACERITPVEV 125 +R+ L LAAEG++++ NRGA ++ + E+ + FEL + LE E ++ Sbjct: 65 TVRKVLARLAAEGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQI 124 Query: 126 AEIKALHYAMLACKAQNDLPGYYSRNQAIHNKINEAARNSVLHQTYLGLNRR 177 A ++ + C D P + + H + E N++L +T L R Sbjct: 125 AGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSR 176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 583,986 Number of extensions: 20242 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 11 Length of query: 212 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 131 Effective length of database: 1,236,335 Effective search space: 161959885 Effective search space used: 161959885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)