BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0089.0014.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas...   153   3e-39
gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa...    92   1e-20
gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo...    86   5e-19
gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo...    86   6e-19
gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas...    85   1e-18

>gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  153 bits (386), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 78/89 (87%)

Query: 1  MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEATDGEIFI 60
          MI V QLQK++G+AHILRGIDCEIR  EVVCVIGPSGSGKSTFLRCLNGLEE +DG+IFI
Sbjct: 1  MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60

Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRXRFF 89
          +GVK+NDP VNLN LRA LGMVFQR   F
Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLF 89


>gi|300310496|ref|YP_003774588.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 91.7 bits (226), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 60/89 (67%)

Query: 1  MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEATDGEIFI 60
          MI VK++ K +G   +L+ +   + + EVVC+IGPSGSGKST LRC+NGLE    G+I I
Sbjct: 1  MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60

Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRXRFF 89
          DG +V+    +++ LR  +GMVFQR   F
Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLF 89


>gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 86.3 bits (212), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 57/89 (64%)

Query: 1  MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEATDGEIFI 60
          MI+++ + K YG+  +L   +  I + EVV V GPSGSGKST ++ +N LE   +G I I
Sbjct: 1  MITLQDVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITI 60

Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRXRFF 89
          DGVKVND   NL  LR+ +GMVFQ    F
Sbjct: 61 DGVKVNDRSTNLPRLRSRVGMVFQHFELF 89


>gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 86.3 bits (212), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query: 1  MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEATDGEIFI 60
          MI +  + K YG   +L      +++ +VV V GPSGSGKST ++ +NGLE    G I +
Sbjct: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60

Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRXRFF 89
          DGV V DP  NL+ LRA +GMVFQ    F
Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELF 89


>gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%)

Query: 1  MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEATDGEIFI 60
          M+  K + K++G   +L GI+  IR+ EVV +IGPSGSGKST LRC+N LEE   G++ +
Sbjct: 1  MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60

Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRXRFF 89
          DG+ V     ++  +R   GMVFQ+   F
Sbjct: 61 DGISVLSGSSSVRAIRQEAGMVFQQFNLF 89


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 322,974
Number of extensions: 11666
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 46
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 46
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)