BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0089.0013.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312521|ref|YP_003776613.1| dihydroorotate dehydrogenase [H...   600   e-173

>gi|300312521|ref|YP_003776613.1| dihydroorotate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  600 bits (1547), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/345 (84%), Positives = 324/345 (93%), Gaps = 1/345 (0%)

Query: 14  VSDKFLYALARPLLFSLDAESAHHLTLPALRRAAALGLTGFIGK-PAADPRTIMGVTFPN 72
           +SDKFLYALARPLLFSL+ E+AHHL LPALR AA   LT F+G+ PAADPRT+MG+TFPN
Sbjct: 1   MSDKFLYALARPLLFSLEPETAHHLVLPALRCAARYSLTDFLGRRPAADPRTVMGITFPN 60

Query: 73  PVGLAAGLDKDGSYIDGLAALGFGSIEIGTVTPRAQPGNPKPRMFRLPAAHAIINRMGFN 132
           PVG+AAGLDKDG+YIDGLAALGFG IE+GTVTPRAQPGNP PRMFRLPAA A+INRMGFN
Sbjct: 61  PVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAASAVINRMGFN 120

Query: 133 NGGVDAFVANVQASRFYQGKQGVLGLNIGKNADTPIERAADDYLHCLEKVYPYASYVTVN 192
           NGGVDAFVANVQ+SRFYQ +QGVLGLNIGKNADTPIERAA+DYLHCLEKVYPYASYVTVN
Sbjct: 121 NGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYLHCLEKVYPYASYVTVN 180

Query: 193 ISSPNTKNLRQLQGASELDALLSQLKEAQLRLADLHKRYVPVALKIAPDIDSEQIKNIAD 252
           ISSPNTKNLRQLQGASELDALLSQLK AQ RLAD H RYVPVALKIAPD+D EQ+KN+AD
Sbjct: 181 ISSPNTKNLRQLQGASELDALLSQLKSAQHRLADRHGRYVPVALKIAPDMDMEQVKNVAD 240

Query: 253 ALLRHKLDGVIATNTTITRDAVKGLQYGDEAGGLSGAPVFELSNQVVRGLKAELGDALPI 312
           ALLRH++DGVIATNTTITRDAVKG+ +G+EAGGLSG PV ELSNQV+RGLKAE+GDALPI
Sbjct: 241 ALLRHQIDGVIATNTTITRDAVKGMPHGEEAGGLSGKPVLELSNQVIRGLKAEVGDALPI 300

Query: 313 IGVGGILSGSNAKAKMEAGASMVQLYSGLIYRGPALVKECADALR 357
           IGVGGI SG++A+AK++AGAS+VQLY+GLIY+GPALV+ECA+ALR
Sbjct: 301 IGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVRECAEALR 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,242
Number of extensions: 48201
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)