BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0089.0005.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 373 e-105 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 263 7e-72 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 260 6e-71 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 193 1e-50 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 166 1e-42 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 373 bits (957), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/220 (85%), Positives = 204/220 (92%) Query: 3 LXARDGLEIQIVTFSDYLQPNEALNAGDLDANAFQHQPFLDSQIKARGYKLTPVGLTITA 62 + ARDGLEIQ V FSDYLQPN AL AGDLDANAFQH+P+L+SQI ARGY++ PVGLTITA Sbjct: 55 VAARDGLEIQTVVFSDYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITA 114 Query: 63 PLGIYSRKYKSVDQLPQGAAIGIQNDPSNGNRALLLLQKYGLIKLKPGVGENGVNATPLD 122 PLGIYSRK++SV+QLPQGAAIGIQNDPSNGNRALLLLQK GLI+LKPGVGENGVNATPLD Sbjct: 115 PLGIYSRKFRSVEQLPQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLD 174 Query: 123 VIENPRKLKLIELDAAQLPRSLDDLAAASINNDYAVKAGLSLQRDTIAVEDAKGRYANLI 182 VIENPRKLKL+ELDAAQLPRSLDDLAAASINNDYA KAGLSLQ+DTIAVED +GRYAN+I Sbjct: 175 VIENPRKLKLVELDAAQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANII 234 Query: 183 VTRTEDKDKPWARKLVKAYQSPEVRSFIESEFKGSLVPAF 222 TR EDKD+PW RKLV+AY S EVR FIE+EFKGSLVPAF Sbjct: 235 ATRAEDKDRPWVRKLVQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 263 bits (673), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 121/216 (56%), Positives = 167/216 (77%), Gaps = 1/216 (0%) Query: 8 GLEIQIVTFSDYLQPNEALNAGDLDANAFQHQPFLDSQIKARGYKLTPVGLTITAPLGIY 67 G +++I+ F+DY+QPN AL+AG+LDAN++QH+PFL++QIK RGYKL G T+ P+ IY Sbjct: 61 GYKVKIIEFNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIY 120 Query: 68 SRKYKSVDQLPQGAAIGIQNDPSNGNRALLLLQKYGLIKLKPGVGE-NGVNATPLDVIEN 126 SRKY+ ++ +P GA IGI NDP+N +R LLLLQK+G IKL+ G+ G NATP+D+ EN Sbjct: 121 SRKYRKLEDVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITEN 180 Query: 127 PRKLKLIELDAAQLPRSLDDLAAASINNDYAVKAGLSLQRDTIAVEDAKGRYANLIVTRT 186 P+K K +E+DAAQLPR+LDDL A+++N DYA KAGL+ RD++ VE YA LI R Sbjct: 181 PKKWKFVEIDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVRE 240 Query: 187 EDKDKPWARKLVKAYQSPEVRSFIESEFKGSLVPAF 222 +D+ +PW KLV+AYQSPEV+ +IE+EFKG ++ A+ Sbjct: 241 KDRAQPWLGKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 260 bits (664), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 129/220 (58%), Positives = 172/220 (78%), Gaps = 3/220 (1%) Query: 3 LXARDGLEIQIVTFSDYLQPNEALNAGDLDANAFQHQPFLDSQIKARGYKLTPVGLTITA 62 L +DG++++++ F+DY+QPN AL AGDLDAN++QHQP+LD+QIK RGYK VG TIT Sbjct: 49 LLEKDGVQMKVIEFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITF 108 Query: 63 PLGIYSRKYKSVDQLPQGAAIGIQNDPSNGNRALLLLQKYGLIKLKPGVGENGVNATPLD 122 P+G+YS+K KS++ L QGA +G+ NDP+NG RALL+LQ G+IKLK + G+ ATPLD Sbjct: 109 PMGVYSKKIKSLNDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLK---ADAGLKATPLD 165 Query: 123 VIENPRKLKLIELDAAQLPRSLDDLAAASINNDYAVKAGLSLQRDTIAVEDAKGRYANLI 182 ++ENP+K+K++ELDAAQLPRSLDD AA IN +YA AGLS +D IAVE + G YAN+I Sbjct: 166 IVENPKKIKIVELDAAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVI 225 Query: 183 VTRTEDKDKPWARKLVKAYQSPEVRSFIESEFKGSLVPAF 222 R DKDKPW KLVKAY SPEV+ F+ ++KGS++ ++ Sbjct: 226 AVRIADKDKPWVAKLVKAYHSPEVKKFVLEKYKGSVITSW 265 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 193 bits (490), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 141/219 (64%), Gaps = 4/219 (1%) Query: 5 ARDGLEIQIVTFSDYLQPNEALNAGDLDANAFQHQPFLDSQIKARGYKL-TPVGLTITAP 63 A++G+++Q+ F+DY+QP N +D N F HQP+LD K+ + PV P Sbjct: 48 AKEGIDLQVKVFTDYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEP 107 Query: 64 LGIYSRKYKSVDQLPQGAAIGIQNDPSNGNRALLLLQKYGLIKLKPGVGENGVNATPLDV 123 YS+KYK + +P GA I I NDPSN RALLLL + GLIKLK ++AT D+ Sbjct: 108 FAAYSQKYKKIADIPNGATIAIPNDPSNSGRALLLLARNGLIKLK---DNTNISATQKDI 164 Query: 124 IENPRKLKLIELDAAQLPRSLDDLAAASINNDYAVKAGLSLQRDTIAVEDAKGRYANLIV 183 +ENP+KLK L+AA LPR L+ + A IN +YA++A L+ +D++ +EDA YANL+V Sbjct: 165 VENPKKLKFRALEAATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLV 224 Query: 184 TRTEDKDKPWARKLVKAYQSPEVRSFIESEFKGSLVPAF 222 R ++KD P +KL A SP+V+ FIE +++G++VPAF Sbjct: 225 AREDNKDSPAIKKLAAALNSPDVKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 130/217 (59%), Gaps = 17/217 (7%) Query: 6 RDGLEIQIVTFSDYLQPNEALNAGDLDANAFQHQPFLDSQIKARGYKLTPVGLTITAPLG 65 R G+++Q+V F+D+ PN AL+AGDLD N FQHQPFLD+ I+ GYKL G I + +G Sbjct: 47 RQGIDVQVVEFTDWTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVG 106 Query: 66 IYSRKYKSVDQLPQGAAIGIQNDPSNGNRALLLLQKYGLIKLKPGVGENGVNATPLDVIE 125 +YS KYKS+ LPQGA +GI NDP N RALLLLQ GLIKLKP VG G + D+I+ Sbjct: 107 LYSLKYKSLTALPQGAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLG---SIDDIID 163 Query: 126 NPRKLKLIELDAAQLPRSLDDLAAASINNDYAVKA-------GLSLQRDTIAVEDAKGRY 178 NPRKL +E++ QL R D+ A + V A GL+ +EDA R+ Sbjct: 164 NPRKLSFVEVEGPQLVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYS----GIEDA--RF 217 Query: 179 ANLIVTRTEDKDKPWARKLVKAYQ-SPEVRSFIESEF 214 A VTR + P +K ++ YQ S VR+ I F Sbjct: 218 AIQFVTRANRVNDPVVQKFIQIYQNSAAVRADIGRAF 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 631,280 Number of extensions: 24093 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 5 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)