BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0089.0002.p
         (135 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide prot...   146   6e-37

>gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  146 bits (368), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 86/112 (76%)

Query: 24  ELRQYRYQQISINTCTIDLRQDILRMYWKDPAGQVFGTFSALRNWLRPQGKELVCATNAG 83
           E++QY+Y Q+ I+TC  D R D +RMYWKD  G     F  L   LR QG+++VCATNAG
Sbjct: 46  EVKQYQYHQVFISTCRADPRTDTIRMYWKDANGVPLANFLRLDAHLRSQGQDMVCATNAG 105

Query: 84  IYDKEHRPLGLYVEGGVALRKLNTRRDAYGNFYLQPNGVFMVEEDRARIVDT 135
           IYDK+ +PLGLYVE GV LRKLNTR++AYGNFYLQPNGVF++ + +A IV+T
Sbjct: 106 IYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVET 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 376,424
Number of extensions: 15066
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,260,010
Effective search space: 74340590
Effective search space used: 74340590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)