BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0032.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311514|ref|YP_003775606.1| two component sensor histidine ...    65   4e-12
gi|300310848|ref|YP_003774940.1| two component sensor histidine ...    55   6e-09

>gi|300311514|ref|YP_003775606.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score = 65.5 bits (158), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 18/197 (9%)

Query: 62  LPMVEVVAYALVFATILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG--LSGRSS- 118
           +P+V  +  +LVFA +LA    W   H   +  L+ A  +   G LD  +   +S R+  
Sbjct: 166 MPIVVALLASLVFALLLA----WYFSH--PIGHLKNAFNQAANGNLDLELEPVMSARNDE 219

Query: 119 IRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLE--FGLDILQHHAQDSATEN 176
           +  L   FD M  ++  L+ +QR +++ VSHELR+P++RL+   GL  +Q   +   T  
Sbjct: 220 LADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLE 279

Query: 177 RILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCG-LTAEALAVGKL 235
           RI    ++   ++ LV ELLTL  LE +  G   E +A+   L D     + EA A+GK 
Sbjct: 280 RI---ERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKH 336

Query: 236 ---ELRCSVEXRNVMQL 249
              +L C V+ +   +L
Sbjct: 337 VDDQLDCRVQVKGNPEL 353


>gi|300310848|ref|YP_003774940.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 465

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 17/139 (12%)

Query: 41  CCVVYVRLDDGGLVRVQSLE--ELPMVEVVA------------YALVFATILAAVCIWLI 86
           C V+Y+ L D  L+R++  +  E P +   A            Y L+F  +L A+  WL+
Sbjct: 141 CRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLFGLQYILLF-LVLIAMLAWLV 199

Query: 87  PHW--RDLEKLRLAAARFGGGRLDARVGLSGRSSIRQLSSHFDRMADRIGKLIHAQRDMV 144
                R + +L  AA+R G     A +  +G + IRQ +  F+ M  RI + I  +  M+
Sbjct: 200 ARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHML 259

Query: 145 NAVSHELRTPLSRLEFGLD 163
            A++H+L+TPL+R+   L+
Sbjct: 260 AAITHDLQTPLTRMRLRLE 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,392
Number of extensions: 29595
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 4
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)