BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0018.p
         (496 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family [...   121   1e-28

>gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family
           [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 179/426 (42%), Gaps = 39/426 (9%)

Query: 76  FQRRGFRTRQLAN---DGKPMLFAELPGNKAGATTVLFYAHLDGQAVTPSEWQQE-SPWK 131
            Q  GF    + N   +G P L AE    +A A TVL Y H D       +W+   SPW+
Sbjct: 54  LQALGFTCEVVDNPLPEGSPFLIAERIEAEA-AFTVLTYGHGDVVRGYDKQWRAGLSPWE 112

Query: 132 PTLKQRNAAGQWEALPIEQLYGANPNPEWRLFGRAAADDKAPIMMMLAAFD-ALKASGAT 190
             ++                         R +GR  AD+KA   +  AA +  +K  G  
Sbjct: 113 IVVEGE-----------------------RWYGRGIADNKAQHTINFAALEEVMKVRGGR 149

Query: 191 PSVNVKIILDAEEEKGSPSLGKVIDQNQALLKADLLVVLDGPMHASNLPTLVFGNRGVAQ 250
              NVK+IL+  EE GSP L  V  Q    LKADL +  DGP   +  PT+  G+RG   
Sbjct: 150 LGYNVKLILEMGEETGSPGLNAVCQQYAERLKADLFIASDGPRVNAPTPTMFLGSRGGCN 209

Query: 251 ATLKVFGPRQDSHSGHYGNYAANPAQTMARLLASMKDDDGRVTVAGYYDAVKLDDESRRV 310
             LK        HSG++G    NP   +A  +A + D+ G + V     +  L    R+ 
Sbjct: 210 FDLKCHLRDGGHHSGNWGGLLRNPGVRLANAIACLVDERGAIRVPALLPSA-LPQSVRKA 268

Query: 311 MRAVPDDEAALRKRLGIAQAEKVGQNYQEAMQYPSLNVRGMQAADVGPKART-IVPGEAI 369
           +  V          +     E      +    + +L V   +  +  P+A    +PG+A 
Sbjct: 269 LAKVKLGGGPTDPEIDTDWGEPDLTPAERVFAWNTLEVLAFKTGN--PEAPVNAIPGQAS 326

Query: 370 AELDLRTVPETDPQVLLGLLKAHIEKQGFHLVNGKPTDEERARY---PKLXWLR---SAF 423
           A   +R V  +D    +  ++AH+++ G+  ++      + A     P   W+R   ++ 
Sbjct: 327 AHCQIRFVVGSDDAHFIEHIRAHLDEHGYDDIDVSLAGVQFAATRLDPDDEWVRWGLASM 386

Query: 424 VKTYGKEPVQIRMMGGTVPTGAMVGALKIPFVIVPLVNADNNQHSANENMRLGNYIDGVQ 483
            +T GKEP  +  +GG++P       L +P + VP      +QH+ NE++      + +Q
Sbjct: 387 QETSGKEPTLLPNLGGSLPNDVFSETLGLPTLWVPHSYPACSQHAPNEHILASVSRESLQ 446

Query: 484 SLTGIL 489
            + G+ 
Sbjct: 447 LMAGLF 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,541,248
Number of extensions: 66717
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 407
Effective length of database: 1,198,455
Effective search space: 487771185
Effective search space used: 487771185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)