BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0015.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...   161   1e-40
gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...    57   3e-09

>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 165/359 (45%), Gaps = 30/359 (8%)

Query: 53  HSTAPLPLVTKQVFTLPSYTTVGGQEIRNVRVGYETYGKLNDVGDNAIFVAHFYSGTSHA 112
           H   PLPL              GG  + +  + YETYG LN    NA+ V H  + + H 
Sbjct: 12  HFAEPLPLQ-------------GGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHV 58

Query: 113 AGKYKDSDAAPGYWDSIIGPGKAIDTDKYFVISADTLVNINTKDPMVTTTGPASINAATG 172
           AG Y D     G+WD+++GPGK++DTD++FVI       +N       +TGP   N ATG
Sbjct: 59  AGVYADDPDNVGWWDNMVGPGKSLDTDRFFVIG------VNNLGSCFGSTGPMHANPATG 112

Query: 173 KPYGMSFPVVAMRDSVRVHKQLLDKLGVRQLVAAVGASGGSIQAMEWAALYPDFVKRVVH 232
           KPYG  FPVV + D V    +L D+LG+    A +G S G +QA+ W+ +YPD ++  + 
Sbjct: 113 KPYGADFPVVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCL- 171

Query: 233 VIGPGFDISPYVISLLDVWSLPVRLDPKWRQGDYYGSG-EPDDGVAAALKVVTVQTRHWD 291
           VI     +S   I+  DV    +  DP++  GD+Y  G  P +G+  A  V  +     D
Sbjct: 172 VIASTPKLSAQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDD 231

Query: 292 WAQAAFGYAPADPAKPPGAAMGNQFKIEAALEAGARARAKVADGNSIIYMSKANQLY--- 348
                FG          G   G  F+IE+ L       +   D N+ + ++KA   +   
Sbjct: 232 DMAEKFGRDLRSGQYQFG--YGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPA 289

Query: 349 -HLSDDEVKGI---KAKILFIPSSTDLVFPLKLSSEALQRFKKLGGRGTLYLLQGPGGH 403
                D  K +   KAK L +  +TD  F  + S E +Q       R +   +  P GH
Sbjct: 290 REFGGDLAKALACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGH 348


>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 27/218 (12%)

Query: 50  AAQHSTAPLPLVTKQVFTLPSYTTVGGQEIRNVRVGYETYGKLNDVGDNAIFVAHFYSGT 109
           A Q +  P P+    V   P +    GQ + N+R+ Y T G   D  + A+ V H   GT
Sbjct: 26  ATQAADPPRPVEGDWV--APRFQFHTGQTLENLRLHYVTLG---DRANPAVLVLH---GT 77

Query: 110 SHAAGKYKDSDAAPGYWDSIIGPGKAIDTDKYFVISADTLVNINTKDPMVTTTGPASINA 169
             +A      D    +   + GPG+ +D  KYF+I  D +    +  P         + A
Sbjct: 78  YQSAQAMLSKD----FGGQLFGPGQPLDASKYFIIIPDGIGVGKSSKP------SDGLRA 127

Query: 170 ATGKPYGMSFPVVAMRDSVRV-HKQLLDKLGVRQLVAAVGASGGSIQAMEWAALYPDFVK 228
           A        FP     D V   ++ L + +G+  L   +G S G +Q   W   YP F  
Sbjct: 128 A--------FPQYNYADMVLAQYRMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFAD 179

Query: 229 RVVHVIGPGFDISPYVISLLDVWSLPVRLDPKWRQGDY 266
            +V +     +++     +  +    ++ DP W  G+Y
Sbjct: 180 GLVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNY 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,195,052
Number of extensions: 49835
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)