BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0014.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspiril...    56   1e-09

>gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspirillum
           seropedicae SmR1]
          Length = 312

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 18  RFTDTTVGNDEAIHDGSVLRIADETDNIYWEPPAALVLQQDG-KQFLQIEQQGFADSVIW 76
           R+ +T  G  E       L ++ ETD IY + P  L ++ DG  + +QIE  G   +V+W
Sbjct: 199 RYIETLEGWAER-EQKRALVVSSETDRIYLDLPPRLSIRDDGWNRRIQIEASGSTSAVVW 257

Query: 77  NPGPIKAAQLGDMPAQDWTRMLCIEAAQI 105
           NP   KA +L       W RMLC+E A +
Sbjct: 258 NPWVSKARRLSQFADDAWQRMLCVETANV 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 428,286
Number of extensions: 16584
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)