BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0011.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H...   116   2e-27
gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...    84   1e-17

>gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  116 bits (290), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 3/177 (1%)

Query: 76  AGXGGLGLVLTQWAKAMGARVIGTVSSDEKAALAQSRGLDHAINYREQDFVAAVREHTGG 135
           A  GG+GL+  QWA+A+G  +IGTVSSDEKAALA   G  H INY+ ++FV  V+E TGG
Sbjct: 147 AAAGGIGLIACQWARALGVNLIGTVSSDEKAALALQHGAAHVINYKTENFVERVKELTGG 206

Query: 136 LGADIVVDGIGGAHFLRSIEASRSGGMAVTIGSISGEGAPAEALAAAQLRGVLMERPSIL 195
            G  +V D IG   FL S++  R  GM V+ G+ SG  AP      A    + + RPS+ 
Sbjct: 207 RGVQVVYDSIGKDTFLGSLDCLRPRGMMVSFGNASGPVAPFGVSELASRGSLFLTRPSLG 266

Query: 196 SFSKDLAQYRLATAAAMTRLQAG--LVIDVAGRLPLAHAAEAHRLLEAGAAQGALLL 250
           +++   A+   ATA  +  +  G  + I++  R  L   A+AH  LE     G+ +L
Sbjct: 267 NYTSTRAELD-ATAGDLFDMVLGNKISIEINQRYALKDVAQAHADLEGRKTTGSTIL 322


>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 23/216 (10%)

Query: 47  NYVDVYQRVGRYPLPLPAVLGVEGSGVITAGXGGLGLVLTQWAKAMGARVIGTVSSDEKA 106
           NY  V+  V          L  E + ++  G  G+G+   Q A+A+G RV  T  S EK 
Sbjct: 123 NYFTVWSNVFDR-----GQLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKC 177

Query: 107 ALAQSRGLDHAINYREQDFVAAVREHTGGLGADIVVDGIGGAHFLRSIEASRSGGMAVTI 166
              +  G + AINY+ +DF A V+E TGG G D+++D +GG +  R I+A    G  V I
Sbjct: 178 RACEELGAERAINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDGRLVFI 237

Query: 167 GSISGEGAPAEALAAAQLR-GVLMERPSILSFSKDLAQ---YRLATAAAMTR-----LQA 217
             + G        A  QL  G +M R   ++ S    +   ++ A AA +       ++A
Sbjct: 238 AQLGG--------AKGQLDMGQVMRRRLTITGSTLRPRPVAFKAAIAAKLREHVWPLIEA 289

Query: 218 GLVIDVA-GRLPLAHAAEAHRLLEAGAAQGALLLEM 252
           G +  V   R PL  AA+AH ++E     G ++LE+
Sbjct: 290 GKIRPVIHHRFPLEQAAQAHAMMEGSTHIGKIMLEL 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 661,222
Number of extensions: 25896
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)