BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0008.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy...   333   4e-93
gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl...   100   6e-23

>gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide
           formyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  333 bits (855), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 162/199 (81%), Positives = 176/199 (88%)

Query: 1   MRSIVILISGRGSNMEAIVRAAQAEHWPVSIAAVISNRTDSAGLEFARRHGVATAVVANK 60
           MRSIVILISGRGSNMEAIVRAAQAE WP  IAAVISNR D++GL FA + G+ TAV+ ++
Sbjct: 1   MRSIVILISGRGSNMEAIVRAAQAEQWPAKIAAVISNRADASGLAFAAQRGIPTAVIPSR 60

Query: 61  DYPTREQFDAALRAAIDVFAPDLVVLAGFMRILTTPFVEHYAGRMLNIHPSLLPSFPGLA 120
           DY TREQFD+ALR  ID FAPDLVVLAGFMRILT PFVEHY GRMLNIHPSLLPSFPGLA
Sbjct: 61  DYSTREQFDSALRDKIDTFAPDLVVLAGFMRILTAPFVEHYQGRMLNIHPSLLPSFPGLA 120

Query: 121 THRQALAAGVRLHGATVHFVTPDLDHGPIVAQVAVPVFGSDSEETLGGRVLEQEHLIYPR 180
           THRQALAAGV+LHGATVHFVTPDLDHGPIVAQ AVPV   DSEE L  RVLEQEH+IYPR
Sbjct: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVQEEDSEEALAERVLEQEHVIYPR 180

Query: 181 AVRWFVEGKLSLDGNRVRL 199
           AVRWF++G+L LDG+RVRL
Sbjct: 181 AVRWFIDGRLRLDGHRVRL 199


>gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  100 bits (250), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 5/196 (2%)

Query: 4   IVILISGRGSNMEAIVRAAQAEHWPVSIAAVISNRTDSAGLEFARR---HGVATAVVANK 60
           +++++S  G  +  ++   ++   PV I A++SN TD   L  +     H +  A  A  
Sbjct: 91  VMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLAASYNIPFHHLPLATGAPM 150

Query: 61  DYPTREQFDAALRAAIDVFAPDLVVLAGFMRILTTPFVEHYAGRMLNIHPSLLPSFPGLA 120
           +    ++    +   ++    DLVVLA +M+IL+    E   GR +NIH S LPSF G  
Sbjct: 151 EVKRAQE--QRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKGAK 208

Query: 121 THRQALAAGVRLHGATVHFVTPDLDHGPIVAQVAVPVFGSDSEETLGGRVLEQEHLIYPR 180
            + QA   GV+L GAT HFVT DLD GPI+ Q    V  S   +TL     + E ++  R
Sbjct: 209 PYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVLAR 268

Query: 181 AVRWFVEGKLSLDGNR 196
           AV+WF E ++ L+G++
Sbjct: 269 AVKWFTEHRILLNGHK 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,128
Number of extensions: 29675
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)