BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0005.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310513|ref|YP_003774605.1| small-conductance mechanosensit...   234   4e-63

>gi|300310513|ref|YP_003774605.1| small-conductance mechanosensitive
           channel protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  234 bits (598), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 135/159 (84%)

Query: 97  MMPLMISQVAMRFVFYVLRRIFVKETTAGAFLLLFEKVFATLVWICVLLYITGMWPDLVD 156
           M PL ++QVAMRFVFYVLR IFVK+ T GA L L EK  A LVW+CV+L+ITG+WPD VD
Sbjct: 1   MFPLTVAQVAMRFVFYVLRGIFVKDATVGALLHLSEKAIAVLVWLCVVLWITGLWPDFVD 60

Query: 157 YLDTTMLPLGRHKTSLLTILQATASVLVTLIIALWAGAMLEDRMMKLSSMHLSLRTVVAR 216
           YLD T LPL RHK SLLT+LQ  ASVLVTLIIALW G +LE+R+MK S MH SLRTVVAR
Sbjct: 61  YLDGTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR 120

Query: 217 MVRAILILVAILVSLSLVGIDLTVLSVFGGALGVGLGLG 255
           M+RA+LIL+A LVSLSLVGIDLTVLSVFGGALGVG+GLG
Sbjct: 121 MLRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLG 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 550,992
Number of extensions: 17157
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)