BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0004.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310513|ref|YP_003774605.1| small-conductance mechanosensit...   303   6e-84

>gi|300310513|ref|YP_003774605.1| small-conductance mechanosensitive
           channel protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  303 bits (776), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 144/185 (77%), Positives = 162/185 (87%)

Query: 5   VSAGGGSKKIASSYVSGFVILLERSLAIGDMVNVDRYFGKVTQINTRYTILEGLDGIESV 64
           V  G G +KIASSYVSGFVILLERS+ IGDMV VD+YFGKVTQINTRYTILEGLDGIESV
Sbjct: 154 VGIGLGLQKIASSYVSGFVILLERSMVIGDMVAVDKYFGKVTQINTRYTILEGLDGIESV 213

Query: 65  LPNEMFMSTPVQNYSLNRKIIRLATQVTILYQDDIETVLSMLEKAAFAVERVSDQILPQA 124
           LPNE+F+S PVQNYSL  +I+RL+TQ+TILYQDD+ETVLS++E+AA  V+RVS Q  PQA
Sbjct: 214 LPNELFVSNPVQNYSLTHRIVRLSTQLTILYQDDVETVLSIMEQAALGVQRVSQQTAPQA 273

Query: 125 LLLKIGEDGLQLEIGFWITDPENGRLNVLSDVNRAIWRVFKTQGIQVAHPKRDIRLMDPR 184
           LL+KIG DGL LE+GFWITDPENGRLNVLSDVNRAIW  FK  GI+VAH KRDIR+MD R
Sbjct: 274 LLIKIGADGLDLELGFWITDPENGRLNVLSDVNRAIWAAFKQHGIEVAHAKRDIRIMDER 333

Query: 185 SFEQS 189
           SF QS
Sbjct: 334 SFRQS 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 542,571
Number of extensions: 19168
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)