BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0003.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310514|ref|YP_003774606.1| stearoyl-CoA desaturase oxidore...   687   0.0  

>gi|300310514|ref|YP_003774606.1| stearoyl-CoA desaturase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/380 (83%), Positives = 350/380 (92%)

Query: 5   GWQIFFYTLIVTHITIAGVTIYLHRCQAHRALDLHAIPSHFFRFWLWITTGMVTKEWAAI 64
           GWQI  YTL++THITI GVT+YLHRCQAHRAL+LHAIPSHFFR WLW+TTGMVTK+WAAI
Sbjct: 19  GWQIVIYTLVMTHITIVGVTLYLHRCQAHRALELHAIPSHFFRLWLWMTTGMVTKQWAAI 78

Query: 65  HRKHHAKCETEEDPHSPQVRGIKKVLLEGAELYRAESKNAETMEKYGHGTPDDWVERNVY 124
           HRKHHAKCETEEDPHSPQ RGIKKV+ EGAELYRAESKN ETMEK+GHGTPDDW+E NVY
Sbjct: 79  HRKHHAKCETEEDPHSPQTRGIKKVMWEGAELYRAESKNDETMEKFGHGTPDDWLEHNVY 138

Query: 125 TRFGWQGVGLMLIIDVMLFGVIGLTVWAVQMLWIPITAAGIINGIGHFWGYRNYDCNDAA 184
           +++ WQGVGLMLIIDV+LFG IGLT+WAVQM WIP  AAG++NG+GHFWGYRNYDC DA+
Sbjct: 139 SKYSWQGVGLMLIIDVLLFGAIGLTIWAVQMAWIPFWAAGVVNGLGHFWGYRNYDCVDAS 198

Query: 185 TNVFPWGIIIGGEELHNNHHTFGTSAKLSSKWYEFDIGWMYIRILEMMGLAKVKKVAPAP 244
           TN+FP GI+IGGEE+HNNHHTFGTSAK S+KWYEFD+GWMYIRILE  GLAKVKKV P P
Sbjct: 199 TNLFPIGILIGGEEMHNNHHTFGTSAKFSAKWYEFDVGWMYIRILETFGLAKVKKVLPVP 258

Query: 245 KFDRQKLVADFDTLQSVIANRYDVMSKYAKSLKRAWADELEHLAEKAKLESRFLKSSKQL 304
           KFDRQK V DF+TLQSVIANRYDV +KYA+SLK AW DEL+HL EKAKLESRFLKSSK+L
Sbjct: 259 KFDRQKAVIDFETLQSVIANRYDVTAKYARSLKSAWKDELDHLIEKAKLESRFLKSSKKL 318

Query: 305 LQREPAKLEDGQKQQLSELFTHSKALQTMHEMRVELGAIWGRSNSTREQLLQQLQDWCAR 364
           LQREP +LEDGQKQQLSELF HSKALQTMHEMR+EL AIW RS+STREQLLQQLQDWCAR
Sbjct: 319 LQREPGRLEDGQKQQLSELFAHSKALQTMHEMRIELSAIWERSHSTREQLLQQLQDWCAR 378

Query: 365 AEASGIQALRDFALRLRSYA 384
           AEASG++ALRDFALRLRSYA
Sbjct: 379 AEASGVKALRDFALRLRSYA 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,123,942
Number of extensions: 43100
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)