BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0038.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311477|ref|YP_003775569.1| 2,3,4,5-tetrahydropyridine-2-ca...   537   e-154

>gi|300311477|ref|YP_003775569.1|
           2,3,4,5-tetrahydropyridine-2-carboxylate
           N-succinyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  537 bits (1383), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/277 (95%), Positives = 272/277 (98%), Gaps = 1/277 (0%)

Query: 1   MTQSIQQIIDQAWEDRASLSPKTAPADIRNAVAEVIAGLNEGTLRVADRQSVGQWQVNQW 60
           MTQSIQQIIDQAWEDRASLSPK+APADIRNAVAEVIAGLN+GTLRVA+RQ VGQW+VNQW
Sbjct: 1   MTQSIQQIIDQAWEDRASLSPKSAPADIRNAVAEVIAGLNDGTLRVANRQGVGQWEVNQW 60

Query: 61  VKKAILLSFRLEDNVPVGSGIPGYPQFYDKVPTKFANYTAEDFAKGGFRVVPPAVARHGS 120
           VKKAILLSFRLEDNVP+ +G  GYPQFYDKVPTKFANYTAEDFAKGGFRVVPPAVARHGS
Sbjct: 61  VKKAILLSFRLEDNVPMSAGT-GYPQFYDKVPTKFANYTAEDFAKGGFRVVPPAVARHGS 119

Query: 121 FIGKNVVLMPSYVNIGAYVDEGAMVDTWATVGSAAQIGKNVHLSGGVGIGGVLEPVQAGP 180
           FIG+NVVLMPSYVNIGAYVDEG MVDTWATVGSAAQIGKNVHLSGGVGIGGVLEPVQAGP
Sbjct: 120 FIGRNVVLMPSYVNIGAYVDEGTMVDTWATVGSAAQIGKNVHLSGGVGIGGVLEPVQAGP 179

Query: 181 VIIEDNCFIGARSEVVEGVIIEENSVLSMGVYIGQSTKIYDRETGEVHYGRVPAGSVVVP 240
           VIIEDNCFIGARSEVVEGVIIEENSVLSMGVYIGQSTKIYDRETGEVHYGRVPAGSVVVP
Sbjct: 180 VIIEDNCFIGARSEVVEGVIIEENSVLSMGVYIGQSTKIYDRETGEVHYGRVPAGSVVVP 239

Query: 241 GNLPSKDGKYSLYAAIIVKKVDAQTRSKTSINELLRG 277
           GNLPSKDGKYSLYAAIIVKKVDAQTRSKTSINELLRG
Sbjct: 240 GNLPSKDGKYSLYAAIIVKKVDAQTRSKTSINELLRG 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 917,766
Number of extensions: 40977
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)