BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0034.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311474|ref|YP_003775566.1| adenine-specific methylase/meth...   209   2e-55

>gi|300311474|ref|YP_003775566.1| adenine-specific
           methylase/methyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 296

 Score =  209 bits (531), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 111/119 (93%)

Query: 1   MTPNNFATVRDILRYAITSFNTEKLFFGHGTNNAFDEAAYLILHTLKLPLDQLEPFLDAR 60
           MTPNNF+TVRD+LRYA+T FNTE+LFFGHG++NA DEAAYLILHTLKLPLDQL+PFLDAR
Sbjct: 1   MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR 60

Query: 61  LLQGEIDNLLRVIMRRTEDRVPAAYITNEAWLGGYRFFVDERVIVPRSFIAELIPEHFS 119
           LL  EI  ++RVI RR++DRVPAAYIT+EAWLG YRF+VDERVIVPRSFIAELIP+HFS
Sbjct: 61  LLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFS 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,791
Number of extensions: 25327
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)