BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0086.0029.p (132 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 234 2e-63 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 102 1e-23 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 94 3e-21 gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 89 1e-19 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 85 2e-18 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 234 bits (597), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/130 (86%), Positives = 125/130 (96%) Query: 2 AGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAVRIAVPSM 61 AGVLTLSLNA AYLSESLRGAILGVTRGQW+A++S+GLTY QTLRY++VPQAVRIAVPSM Sbjct: 91 AGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSM 150 Query: 62 SNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVYWFLSICFEALQHR 121 SNTLISLIKDTSLVSVITVTELML+TKE+IAVTFRPLPLY+AAA +YW LS+CFEALQHR Sbjct: 151 SNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHR 210 Query: 122 LEKKLERAHQ 131 LEKKL +AHQ Sbjct: 211 LEKKLGKAHQ 220 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 102 bits (253), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 80/131 (61%) Query: 1 MAGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAVRIAVPS 60 ++G + LSLNAGAY+SE R I + RGQ A+ SLG+ Y T+RYVV+PQA R +P Sbjct: 116 LSGTVALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPP 175 Query: 61 MSNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVYWFLSICFEALQH 120 + N I+L+KD+SLVS I + EL + + + R YI +++Y+ ++IC + Sbjct: 176 LGNEAITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVA 235 Query: 121 RLEKKLERAHQ 131 RLE K H+ Sbjct: 236 RLESKYSAPHR 246 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 75/127 (59%) Query: 4 VLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAVRIAVPSMSN 63 VL ++LN+GAY+SE R I + RGQ AS SLG++Y TLR VV+PQA R +P + N Sbjct: 122 VLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGN 181 Query: 64 TLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVYWFLSICFEALQHRLE 123 I+++KD+SL S I + EL + + + R Y+ +++YW +++ AL LE Sbjct: 182 NAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLE 241 Query: 124 KKLERAH 130 + + Sbjct: 242 ARYGKGD 248 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 69/98 (70%) Query: 1 MAGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAVRIAVPS 60 + G+L L + +GAY+SE +RGAI + RGQ A+ SLGL Y +R V++PQA +P Sbjct: 90 VCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPP 149 Query: 61 MSNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPL 98 + N I+LIK+++LVS++T+ +LM ++II+VT+R L Sbjct: 150 LGNEFIALIKNSALVSLLTIADLMHEGEKIISVTYRSL 187 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 84.7 bits (208), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 67/107 (62%) Query: 2 AGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAVRIAVPSM 61 A V ++ +N+GAY++E +RGA L V RG A +LGL + L +V+ P A+R VP+M Sbjct: 91 AAVTSIVVNSGAYIAEIVRGAFLSVPRGLREAGLALGLPVWRVLAFVIGPVAIRRMVPAM 150 Query: 62 SNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVY 108 N I +KDTSL VI V EL +EI+A FR + ++IA A +Y Sbjct: 151 GNQFIVSLKDTSLFIVIGVGELTRQGQEIMAANFRAVEIWIAVAAIY 197 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 358,117 Number of extensions: 12180 Number of successful extensions: 67 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 18 Length of query: 132 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 57 Effective length of database: 1,264,745 Effective search space: 72090465 Effective search space used: 72090465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)